 John Davis
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06c9475683
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Merge pull request #14537 from jdavcs/dev_managedb_cli
A replacement for manage_db.sh + rewrite of migration system documentation
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2022-09-22 10:06:45 -04:00 |
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Marius van den Beek
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ed44a94ddf
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Merge pull request #14671 from dannon/fix-vcf-rendering
VCF/Tabular display fix
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2022-09-22 09:43:12 +02:00 |
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John Chilton
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6dce7be430
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Merge pull request #14669 from jmchilton/misc_ts_cleanup
Various unsorted tool shed code cleanup.
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2022-09-21 15:53:49 -04:00 |
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John Chilton
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5059ec02f0
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Merge pull request #14662 from jmchilton/cleanup_ts_tests
Cleanup Tool Shed Tests
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2022-09-21 15:49:43 -04:00 |
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Dannon Baker
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446b3ccdbf
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Consolidate parser args
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2022-09-21 14:36:20 -04:00 |
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Dannon Baker
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ff1309fefa
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Instead of trying to ignore comment lines, this catches the exception
and retries individual line parsing. This allows for individual line
handling, where failing lines are passed through intact.
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2022-09-21 14:10:34 -04:00 |
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Dannon Baker
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d6d918ae29
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Specify comment indicator for tabular renderer.
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2022-09-21 13:12:58 -04:00 |
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John Chilton
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7563356ca8
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Cleanup comments in shed_index.py.
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2022-09-21 11:27:30 -04:00 |
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John Chilton
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4d03a56156
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Remove broken block in metadata_generator.
generate_workflow_metadata was removed at some point and this would cause an exception
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2022-09-21 11:27:29 -04:00 |
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John Chilton
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3842317102
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Clean up tool shed install model a bit.
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2022-09-21 11:27:28 -04:00 |
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Marius van den Beek
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d5c9cc647f
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Merge pull request #14638 from guerler/revise_history_view
Remove legacy history usage from js-modules
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2022-09-21 11:14:50 +02:00 |
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Marius van den Beek
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926677d96a
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Merge pull request #14657 from jmchilton/populators_typing
Some more typing for test populators.
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2022-09-21 11:07:57 +02:00 |
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Marius van den Beek
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afc58c9de1
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Merge pull request #14663 from nsoranzo/remove_redundant_base_class
Remove now redundant base class
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2022-09-21 11:07:00 +02:00 |
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Nicola Soranzo
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7f55e10cd2
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Remove now redundant base class
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2022-09-21 01:18:56 +01:00 |
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John Chilton
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5bf5a3d85e
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Cleanup galaxy context no longer needed for tool shed tests.
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2022-09-20 18:30:34 -04:00 |
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John Chilton
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ee33f082e6
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Remove more unused code from tool shed tests.
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2022-09-20 18:26:25 -04:00 |
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John Chilton
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68fc220a77
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Remove unused twilltestcase method.
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2022-09-20 18:26:25 -04:00 |
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John Chilton
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4ec76afaac
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Eliminate more unneeded role checks in tool shed functional tests.
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2022-09-20 18:25:56 -04:00 |
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John Chilton
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797db736fe
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Remove typing exceptions for tool shed tests.
The testing seems fixed.
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2022-09-20 18:25:47 -04:00 |
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John Chilton
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678d702fbd
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Remove unused mypy entry.
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2022-09-20 18:25:47 -04:00 |
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John Chilton
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f24c720fc0
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Remove unused functions in test_db_util.
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2022-09-20 18:25:47 -04:00 |
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John Chilton
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860ab797a8
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Remove a couple functions from test_db_util that talk to the Galaxy database directly.
These functions were just effectively ensuring a Galaxy user was created properly - but the framework does that and the UI login double does that.
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2022-09-20 18:25:47 -04:00 |
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John Chilton
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8134c58f35
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Remove some datatypes cruft in tool shed tests.
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2022-09-20 18:25:47 -04:00 |
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John Chilton
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cec8c1ac9f
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Use API in lieu of direct db access in shed functional tests for categories.
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2022-09-20 18:25:47 -04:00 |
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John Chilton
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fcbaf62e05
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API migration notes...
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2022-09-20 18:11:39 -04:00 |
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Dannon
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a8902e48c7
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Merge pull request #14653 from shubham4315/jQuery-Elimination
Eliminated JQuery from PluginList
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2022-09-20 15:13:26 -04:00 |
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John Chilton
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65c4edac6a
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Rename has_yaml to yaml_content per PR review request.
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2022-09-20 11:24:48 -04:00 |
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ShubhamandDannon
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300bb6a6cb
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Update client/src/components/Visualizations/PluginList.vue
Co-authored-by: Dannon <dannon.baker@gmail.com>
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2022-09-20 10:47:32 +02:00 |
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guerler
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542be34ac5
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Add copy dialog
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2022-09-19 20:34:21 -04:00 |
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John Chilton
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02d34ea341
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Merge pull request #14656 from jmchilton/shed_app_2
ToolShedApp for more correct typing in tool shed code.
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2022-09-19 18:17:15 -04:00 |
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John Chilton
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0da47b2ccf
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Merge pull request #14649 from jmchilton/review
Remove repository review functionality from tool shed.
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2022-09-19 14:50:25 -04:00 |
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John Chilton
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e6e94a920a
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Some more typing for test populators.
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2022-09-19 11:19:18 -04:00 |
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John Chilton
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23b27f0dfa
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ToolShedApp for more correct typing in tool shed code.
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2022-09-19 10:50:07 -04:00 |
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Marius van den Beek
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77182eb7f1
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Merge pull request #14643 from mvdbeek/dont_expand_tool_form_for_optional_unconnected_data_inpiut
Enable simplified workflow with optional disconnected data inputs
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2022-09-19 15:10:49 +02:00 |
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Shubham
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a5c2401491
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Eliminated JQuery from PluginList
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2022-09-19 15:10:07 +02:00 |
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mvdbeek
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0d7149c329
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Test that optional data inputs render with simplified form
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2022-09-19 11:25:01 +02:00 |
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guerler
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42c20c549d
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Add alert for purged histories
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2022-09-18 15:23:08 -04:00 |
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guerler
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cb0fc74b02
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Fix history store handling, avoid overwriting loaded attributes
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2022-09-18 15:23:08 -04:00 |
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guerler
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3e3a7f6582
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Attempt to reduce console errors for rule builder
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2022-09-18 15:23:08 -04:00 |
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guerler
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2b17a34400
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Consolidate rules collection builder handling
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2022-09-18 15:23:08 -04:00 |
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guerler
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d1e6908948
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Consolidate code duplication of collection builders in data library
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2022-09-18 15:23:08 -04:00 |
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guerler
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96bbe85603
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Remove unused options
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2022-09-18 15:23:08 -04:00 |
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guerler
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afd0f7492c
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Improve consistency of collection builder handling
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2022-09-18 15:23:08 -04:00 |
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guerler
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53a00609d1
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Remove debug statements
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2022-09-18 15:23:08 -04:00 |
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guerler
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9e3a632eda
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Use history component in history view route
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2022-09-18 15:23:08 -04:00 |
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guerler
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6d003018ac
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Remove legacy copy history modal from history grid, vue variant available in current history dropdown
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2022-09-18 15:23:08 -04:00 |
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guerler
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d89c24ad00
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Properly parse selected history id to collection builders
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2022-09-18 15:23:08 -04:00 |
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guerler
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84f6da4574
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Decouple data library from legacy history
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2022-09-18 15:23:08 -04:00 |
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Björn Grüning
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8bcdff6f3a
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Merge pull request #14642 from jmchilton/tool_shed_registry_refactor
Refactor tool shed registry into utility code.
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2022-09-17 19:23:16 +02:00 |
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Nicola Soranzo
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f9d0dabd2e
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Merge pull request #14650 from galaxybot/dev_auto_update_dependencies
Update Python dependencies
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2022-09-17 07:35:38 +01:00 |
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