opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-24 16:30:27 +08:00
Code Issues Packages Projects Releases Wiki Activity

Decouple data library from legacy history

Browse Source
This commit is contained in:
guerler
2022-09-18 15:23:08 -04:00
parent 8bcdff6f3a
commit 84f6da4574
1 changed files with 7 additions and 89 deletions
Download Patch File Download Diff File Expand all files Collapse all files
client/src/components/Libraries/LibraryFolder/TopToolbar/import-to-history/import-collection.js
+7 -89
View File
@@ -5,14 +5,6 @@ import mod_library_model from "mvc/library/library-model";
import _ from "underscore";
import Backbone from "backbone";
import axios from "axios";
import LIST_CREATOR from "components/Collections/ListCollectionCreator";
import LIST_CREATOR_MODAL from "components/Collections/ListCollectionCreatorModal";
import PAIR_CREATOR from "components/Collections/PairCollectionCreator";
import PAIR_CREATOR_MODAL from "components/Collections/PairCollectionCreatorModal";
import PAIRED_CREATOR from "components/Collections/PairedListCollectionCreator";
import PAIRED_CREATOR_MODAL from "components/Collections/PairedListCollectionCreatorModal";
import RULE_CREATOR_MODAL from "components/Collections/RuleBasedCollectionCreatorModal";
import HDCA_MODEL from "mvc/history/hdca-model";
var ImportCollectionModal = Backbone.View.extend({
options: null,
@@ -112,88 +104,14 @@ var ImportCollectionModal = Backbone.View.extend({
this.collectionImport(collection_elements, selected_history_id, selected_history_name);
}
},
collectionImport: function (collection_elements, history_id, history_name) {
const modal_title = `Creating Collection in ${history_name}`;
let creator_class;
let creationFn;
collectionImport: function (collectionElements, historyId) {
this.collectionType = this.modal.$el.find("#library-collection-type-select").val();
if (this.collectionType === "list") {
creator_class = LIST_CREATOR;
creationFn = (elements, name, hideSourceItems) => {
elements = elements.map((element) => ({
id: element.id,
name: element.name,
src: "ldda",
}));
return this.createHDCA(elements, this.collectionType, name, hideSourceItems, history_id);
};
LIST_CREATOR_MODAL.listCollectionCreatorModal(
collection_elements,
{ creationFn: creationFn, title: modal_title, defaultHideSourceItems: true },
creator_class
);
} else if (this.collectionType === "paired") {
creator_class = PAIR_CREATOR;
creationFn = (elements, name, hideSourceItems) => {
elements = [
{ name: "forward", src: "ldda", id: elements[0].id },
{ name: "reverse", src: "ldda", id: elements[1].id },
];
return this.createHDCA(elements, this.collectionType, name, hideSourceItems, history_id);
};
PAIR_CREATOR_MODAL.pairCollectionCreatorModal(
collection_elements,
{ creationFn: creationFn, title: modal_title, defaultHideSourceItems: true },
creator_class
);
} else if (this.collectionType === "list:paired") {
creator_class = PAIRED_CREATOR;
creationFn = (elements, name, hideSourceItems) => {
elements = elements.map((pair) => ({
collection_type: "paired",
src: "new_collection",
name: pair.name,
element_identifiers: [
{
name: "forward",
id: pair.forward.id,
src: "ldda",
},
{
name: "reverse",
id: pair.reverse.id,
src: "ldda",
},
],
}));
return this.createHDCA(elements, "list:paired", name, hideSourceItems, history_id);
};
PAIRED_CREATOR_MODAL.pairedListCollectionCreatorModal(
collection_elements,
{ creationFn: creationFn, title: modal_title, defaultHideSourceItems: true },
creator_class
);
} else if (this.collectionType === "rules") {
const creationFn = (elements, collectionType, name, hideSourceItems) => {
return this.createHDCA(elements, collectionType, name, hideSourceItems, history_id);
};
RULE_CREATOR_MODAL.ruleBasedCollectionCreatorModal(collection_elements, "library_datasets", "collections", {
creationFn: creationFn,
defaultHideSourceItems: true,
});
}
},
createHDCA: function (elementIdentifiers, collectionType, name, hideSourceItems, history_id, options) {
const hdca = new HDCA_MODEL.HistoryDatasetCollection({
history_content_type: "dataset_collection",
collection_type: collectionType,
history_id: history_id,
name: name,
hide_source_items: hideSourceItems,
copy_elements: !hideSourceItems,
element_identifiers: elementIdentifiers,
});
return hdca.save(options);
const selection = {
models: collectionElements,
historyId: historyId,
};
const Galaxy = getGalaxyInstance();
Galaxy.currHistoryPanel.buildCollection(this.collectionType, selection, true);
},
templateCollectionSelectModal: function () {
return _.template(