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Remove broken block in metadata_generator.

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generate_workflow_metadata was removed at some point and this would cause an exception
This commit is contained in:
John Chilton
2022-09-21 11:27:29 -04:00
parent 3842317102
commit 4d03a56156
1 changed files with 0 additions and 26 deletions
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lib/galaxy/tool_shed/metadata/metadata_generator.py
-26
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@@ -1,4 +1,3 @@
import json
import logging
import os
import tempfile
@@ -388,31 +387,6 @@ class MetadataGenerator:
else:
for tup in invalid_files_and_errors_tups:
self.invalid_file_tups.append(tup)
# Find all exported workflows.
elif name.endswith(".ga"):
relative_path = os.path.join(root, name)
if os.path.getsize(os.path.abspath(relative_path)) > 0:
fp = open(relative_path, "rb")
workflow_text = fp.read()
fp.close()
if workflow_text:
valid_exported_galaxy_workflow = True
try:
exported_workflow_dict = json.loads(workflow_text)
except Exception:
log.exception(
"Skipping file %s since it does not seem to be a valid exported Galaxy workflow",
str(relative_path),
)
valid_exported_galaxy_workflow = False
if (
valid_exported_galaxy_workflow
and "a_galaxy_workflow" in exported_workflow_dict
and exported_workflow_dict["a_galaxy_workflow"] == "true"
):
metadata_dict = self.generate_workflow_metadata(
relative_path, exported_workflow_dict, metadata_dict
)
# Handle any data manager entries
data_manager_config = get_config_from_disk(suc.REPOSITORY_DATA_MANAGER_CONFIG_FILENAME, files_dir)
metadata_dict = self._generate_data_manager_metadata(