Kelly Vincent 6dc8d3b3c4 Modified Solid_to_Fastq's underlying perl script so that it would not produce the None file, and also uncommented tests and updated example

2009-10-13 16:49:38 -04:00

..

annotation_profiler

typo fixes for tools in folders A-M

2009-09-27 23:11:43 -04:00

data_destination

merging from central

2008-10-28 11:28:15 -04:00

data_source

Add a new option, 'allow_library_path_paste' that adds a new upload page

2009-10-01 12:35:41 -04:00

emboss_5

Forgot to eliminate the emboss path...

2008-04-25 19:07:26 +00:00

encode

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

evolution

Changing an 'and' to 'or' in SNP mutate codon tool error checking.

2009-09-22 11:40:41 -04:00

extract

typo fixes for tools in folders A-M

2009-09-27 23:11:43 -04:00

fasta_tools

Fixed for functional tests for new version of fasta_filter_by_length tool contributed by James Casbon.

2009-07-23 14:31:11 -04:00

fastx_toolkit

Modified test data and tool conf for fastq stats

2009-10-08 14:50:28 -04:00

filters

Trimmer fix for fastq processing

2009-10-10 16:18:08 -04:00

hyphy

typo fixes for tools in folders A-M

2009-09-27 23:11:43 -04:00

maf

Fix reporting number of regions processed in MAF Stats tool.

2009-09-30 14:06:06 -04:00

metag_tools

Modified test data and tool conf for fastq stats

2009-10-08 14:50:28 -04:00

new_operations

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

next_gen_conversion

Modified Solid_to_Fastq's underlying perl script so that it would not produce the None file, and also uncommented tests and updated example

2009-10-13 16:49:38 -04:00

plotting

Fix bar chart output format.

2009-08-03 16:38:27 -04:00

regVariation

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

samtools

bug fix for pilup_parser reported by user

2009-10-06 09:44:34 -04:00

solid_tools

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

sr_mapping

Changed Bowtie so that if alignment parameters cannot be read, it errors out

2009-10-12 16:14:54 -04:00

stats

Added 'Median' operation to grouping tool

2009-10-08 10:37:26 -04:00

taxonomy

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

validation

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

visualization

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00