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Modified test data and tool conf for fastq stats

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This commit is contained in:
Anton Nekrutenko
2009-10-08 14:50:28 -04:00
parent f1071069f9
commit 854fb020b8
2 changed files with 4 additions and 6 deletions
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tools/fastx_toolkit/fastx_quality_statistics.xml
+2 -4
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@@ -1,16 +1,14 @@
<tool id="cshl_fastx_quality_statistics" name="Compute quality statistics">
<description></description>
<command>zcat -f $input | fastx_quality_stats -o $output -Q $offset</command>
<command>zcat -f $input | fastx_quality_stats -o $output -Q 33</command>
<inputs>
<param format="fastqsanger" name="input" type="data" label="Library to analyse" />
<param name="offset" type="hidden" value="33"/>
</inputs>
<tests>
<test>
<param name="input" value="fastq_stats1.fastq" ftype="fastq"/>
<param name="offset" value="64" />
<param name="input" value="fastq_stats1.fastq" ftype="fastqsanger"/>
<output name="output" file="fastq_stats1.out" />
</test>
</tests>
tools/metag_tools/split_paired_reads.xml
+2 -2
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@@ -7,8 +7,8 @@
<param name="input" type="data" format="fastqsanger" label="Your paired-end file" />
</inputs>
<outputs>
<data name="output1" format="input"/>
<data name="output2" format="input"/>
<data name="output1" format="fastqsanger"/>
<data name="output2" format="fastqsanger"/>
</outputs>
<tests>
<test>