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Fix reporting number of regions processed in MAF Stats tool.

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This commit is contained in:
Daniel Blankenberg
2009-09-30 14:06:06 -04:00
parent 19a36f8c15
commit 2240756b32
1 changed files with 3 additions and 2 deletions
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tools/maf/maf_stats.py
+3 -2
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@@ -54,7 +54,7 @@ def __main__():
out = open(output_filename, 'w')
num_region = 0
num_region = None
species_summary = {}
total_length = 0
#loop through interval file
@@ -97,7 +97,8 @@ def __main__():
for spec in species_summary:
out.write( "%s\t%s\t%.4f\n" % ( spec, species_summary[spec], float( species_summary[spec] ) / total_length ) )
out.close()
print "%i regions were processed with a total length of %i." % ( num_region, total_length )
if num_region is not None:
print "%i regions were processed with a total length of %i." % ( num_region + 1, total_length )
maf_utilities.remove_temp_index_file( index_filename )
if __name__ == "__main__": __main__()