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58,912 Commits 69 Branches 243 Tags
7f04b5d6987bdfdc60eb32dc6801921c224a142a
Commit Graph
119 Commits
Author SHA1 Message Date
Nicola Soranzo 7f04b5d698 Merge branch 'release_22.01' into dev 2022-03-02 20:08:55 +00:00
Nicola Soranzo 856269b248 Merge branch 'release_21.09' into release_22.01 2022-03-02 19:18:43 +00:00
mvdbeek a9eb669158 Add profile version to ethercalc 
It writes to stderr, so that fails on most job runners (why not all???).
 2022-03-02 14:10:52 +01:00
Dannon Baker 03351d2a9f Apply black to tools as well 2022-02-03 09:12:13 -05:00
mvdbeek 6e01abe4b2 Bump version and add profile 2021-11-26 16:18:31 +01:00
Gianmauro Cuccuru 0cf0b82959 Update interactivetool_pyiron.xml 2021-11-26 15:57:34 +01:00
Michael R. Crusoe 7819fdc7a6 tighten type ignores 2021-11-23 13:12:07 +01:00
mvdbeek 4dbf235f23 Ignore type in unused function 2021-10-12 15:25:30 +02:00
Nuwan Goonasekera 088c8430d1 Merge pull request #12650 from neoformit/dev-isee 
New interactive tool - iSEE
 2021-10-12 08:37:48 +05:30
Cameron Hyde 1fcef64f32 Remove redundant comment 2021-10-06 13:20:18 +10:00
Cameron Hyde 1039c32b72 Add interactive tool iSEE 
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iSEE is a new interactive tool for visualizing single-cell RNAseq data. It requires a new datatype ``rdata.se`` which allows users to upload an R HDF5SummarizedExperiment object.
 2021-10-06 12:57:52 +10:00
Anup Kumar d46c96a63e Add tag version 2021-09-09 11:36:13 +02:00
Anup Kumar 582fb25567 Fix review comments 2021-09-09 10:25:08 +02:00
Anup Kumar 212248b3e2 Merge branch 'galaxyproject:dev' into ml-jupyter-notebook 2021-09-08 18:04:55 +02:00
Anup Kumar 8fbac0389f Fix review comments 2021-09-08 16:38:10 +02:00
Anup Kumar f3d042e249 Fix review comments 2021-09-08 16:36:19 +02:00
Marius van den Beek 04885b4ae2 Merge pull request #11537 from luke-c-sargent/dev 
Update bam.iobio interactive tool wrapper
 2021-09-08 13:14:53 +02:00
Anup Kumar 75aa9aaa9d Update tool 2021-06-24 16:13:08 +02:00
Anup Kumar 3a28a7d613 Update ml interactive tools 2021-06-24 15:36:49 +02:00
Anup Kumar f384154e20 Update tools 2021-06-24 15:08:56 +02:00
Marius van den Beek e5e8bd9d3b Merge pull request #12113 from martenson/jupyter-multiple 
allow jupyter IT to take multiple inputs
 2021-06-18 18:09:51 +02:00
Anthony Bretaudeau bb5a98360b Update AskOmics interactive tool to 4.3.1 2021-06-17 14:17:06 +02:00
Gianmauro Cuccuru 8823a617d1 Update interactivetool_pyiron.xml 2021-06-10 17:26:04 +02:00
Martin Cech d7b1a913bc properly quote var expansion, since it can contain spaces now 2021-06-10 15:21:09 +02:00
Martin Cech cd2c1a5d85 prefix all datasets with their index 2021-06-10 14:30:34 +02:00
Martin Cech 0b1bad8958 respect the cheetah style 2021-06-09 13:57:32 +02:00
Martin Cech 26a7bcf89c bump version 2021-06-09 13:50:35 +02:00
Martin Cech fc2644033b allow multiple inputs in jupyter IT 
+ fix a bug with saving notebooks on exit that had non-default name
+ remove the confusion with naming notebooks after inputs
 2021-06-09 13:49:03 +02:00
John Chilton 52a5247b57 Merge pull request #12077 from maximskorik/patch-1 
Fix typo in `interactivetool_jupyter_notebook.xml` help section
 2021-06-01 10:39:54 -04:00
Anup Kumar 85e1617e8d Update tool id and fix indentation 2021-06-01 03:54:03 +02:00
Anup Kumar 0663eb96c3 Merge branch 'galaxyproject:dev' into ml-jupyter-notebook 2021-06-01 03:49:44 +02:00
Max Skoryk 848210306c Fix typo 
collegue -> colleague
 2021-05-31 11:56:08 +02:00
Luke Sargent 66c7508186 suggested changes 2021-05-12 12:25:51 -07:00
Björn Grüning 393ce2f4fe small cleanups 2021-03-19 21:52:10 +01:00
Björn Grüning 96c943050c remove macros 2021-03-19 21:32:09 +01:00
Björn Grüning 77b8f3ee71 change tool ID 2021-03-19 09:05:33 +01:00
Marie Gramm 1f1344c3de change file name 2021-03-19 10:38:15 +11:00
Marie Gramm 76e7e2d4cf add license 2021-03-19 09:54:30 +11:00
Marie Gramm a7ff05a086 add interactive simtext tool, PR https://github.com/galaxyproject/tools-iuc/pull/3508 2021-03-13 10:55:13 +11:00
Anthony Bretaudeau b0fc281d54 Fix $HOME for some gxit requiring a specific one 2021-03-09 15:10:41 +01:00
Marius van den Beek 5e763d1171 Merge pull request #11547 from bgruening/it_openrefine 
[21.01] allow using Openrefine without data inputs
 2021-03-05 13:45:28 +01:00
Marius van den Beek 768d1263a5 Merge pull request #11546 from bgruening/it_cellxgne 
[21.01] update the cellxgene IT container
 2021-03-05 13:45:11 +01:00
Björn Grüning 4172bacc75 bump tool version 2021-03-05 10:40:20 +01:00
Björn Grüning de9f787038 bump tool version 2021-03-05 10:39:42 +01:00
Björn Grüning e8d8fd837a bumping tool version 2021-03-05 10:39:07 +01:00
Bjoern Gruening 684c2bf436 allow using OpenRefine without an input 2021-03-05 10:24:03 +01:00
Björn Grüning 69d59614cb fix spacing 2021-03-05 10:19:54 +01:00
Bjoern Gruening 7d8b13daea upgrade cellxgene container 2021-03-05 10:16:11 +01:00
Bjoern Gruening ef5c9cd9e0 some pyiron fixes from EU 2021-03-05 09:55:20 +01:00
Luke Sargent de3092483d implementing requested changes -- dockerhub->quay, versioning image, adding output, suppressing stderr for green history item 2021-03-04 14:54:00 -08:00