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Fix review comments

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This commit is contained in:
Anup Kumar
2021-09-08 16:36:19 +02:00
parent 75aa9aaa9d
commit f3d042e249
1 changed files with 10 additions and 10 deletions
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tools/interactive/interactivetool_ml_jupyter_notebook.xml
+10 -10
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@@ -5,19 +5,19 @@
<entry_points>
<entry_point name="GPU enabled Interactive Jupyter Notebook for Machine Learning" requires_domain="True">
<port>8888</port>
<url>ipython/lab</url>
<url>ipython/lab</url>
</entry_point>
</entry_points>
<environment_variables>
<environment_variable name="HISTORY_ID">$__history_id__</environment_variable>
<environment_variable name="REMOTE_HOST">$__galaxy_url__</environment_variable>
<environment_variable name="GALAXY_WEB_PORT">8080</environment_variable>
<environment_variable name="GALAXY_URL">$__galaxy_url__</environment_variable>
<environment_variable name="DISABLE_AUTH">true</environment_variable>
<environment_variable name="GALAXY_URL">$__galaxy_url__</environment_variable>
<environment_variable name="DISABLE_AUTH">true</environment_variable>
<environment_variable name="API_KEY" inject="api_key" />
</environment_variables>
<command detect_errors="aggressive"><![CDATA[
#import re
#import re
export GALAXY_WORKING_DIR=`pwd` &&
mkdir -p ./jupyter/outputs/ &&
mkdir -p ./jupyter/data &&
@@ -31,14 +31,14 @@
cd ./jupyter/ &&
export HOME=/home/\$NB_USER/ &&
export PATH=/home/\$NB_USER/.local/bin:\$PATH &&
#if $mode.mode_select == 'scratch':
## copy all notebooks, workflows and data
cp /home/\$NB_USER/home_page.ipynb ./ &&
#if $mode.mode_select == 'scratch':
## copy all notebooks, workflows and data
cp /home/\$NB_USER/home_page.ipynb ./ &&
cp /home/\$NB_USER/notebooks/*.ipynb ./notebooks/ &&
cp /home/\$NB_USER/elyra/*.* ./elyra/ &&
cp /home/\$NB_USER/data/*.tsv ./data/ &&
## provide all rights to copied files
chown -R \$NB_USER:users `pwd` &&
chown -R \$NB_USER:users `pwd` &&
chown \$NB_USER ./home_page.ipynb &&
chown \$NB_USER ./notebooks/ &&
chown \$NB_USER ./notebooks/*.ipynb &&
@@ -56,7 +56,7 @@
<conditional name="mode">
<param name="mode_select" type="select" label="Do you already have a notebook?" help="If not, no problem we will provide you with a default one.">
<option value="scratch">Start with a fresh notebook</option>
<option value="previous">Load a previous notebook</option>
<option value="previous">Load a previous notebook</option>
</param>
<when value="scratch"/>
<when value="previous">
@@ -69,7 +69,7 @@
</inputs>
<outputs>
<data name="jupyter_notebook" format="ipynb" label="Executed Notebook"></data>
<data name="jupyter_notebook" format="ipynb" label="Executed Notebook" />
</outputs>
<tests>
<test expect_num_outputs="1">