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Fix $HOME for some gxit requiring a specific one
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@@ -29,6 +29,7 @@
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## change into the directory where the notebooks are located
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cd ./jupyter/ &&
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export HOME=/home/jovyan/ &&
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export PATH=/home/jovyan/.local/bin:\$PATH &&
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#if $mode.mode_select == 'scratch':
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@@ -95,12 +96,12 @@
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You can import data into the notebook via a predefined `get()` function and write results back to Galaxy with a `put()` function.
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The Climate version of the Jupyter Notebook offers a lot of preinstalled tools for climate science. The list of packages is based on what is available
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The Climate version of the Jupyter Notebook offers a lot of preinstalled tools for climate science. The list of packages is based on what is available
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on the [Pangeo](http://pangeo.io/) platform and [Pangeo stacks](https://pangeo-data.github.io/pangeo-stacks/).
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- **Core scipy packages**: numpy, scipy, matplotlib, pandas, xarray, sparse and sympy
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- **Data science**: scikit-image, scikit-learn, dask-ml, tensorflow, keras, pytorch-cpu, dask_labextension
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- **Visualization**: holoviews, panel, geoviews, hvplot, geoviews, datashader, seaborn, altair, descartes, folium, vega,
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- **Visualization**: holoviews, panel, geoviews, hvplot, geoviews, datashader, seaborn, altair, descartes, folium, vega,
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vega_datasets, palettable, cmocean,plotly, psy-maps, psy-reg, psyplot, psyplot-gui, psy-maps, psy-reg,
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geopy, branca
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- **Geospatial**: iris, cartopy, basemap, basemap-data-hires, geopandas, rasterio, netcdf4, erddapy, pydap, h5py, h5netcdf, regionmask and rio-cogeo
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@@ -8,7 +8,9 @@
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</entry_point>
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</entry_points>
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<command><![CDATA[
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export HOME=/root &&
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forever start `which ethercalc` --cors &
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bash $wait_script
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&&
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@@ -26,6 +26,7 @@
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## change into the directory where the notebooks are located
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cd ./jupyter/ &&
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export HOME=/home/jovyan/ &&
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export PATH=/home/jovyan/.local/bin:\$PATH &&
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#if $mode.mode_select == 'scratch':
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@@ -30,6 +30,7 @@
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## change into the directory where the notebooks are located
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cd ./jupyter/ &&
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cp \${HOME}/examples/* ./ &&
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export HOME=/home/jovyan/ &&
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export PATH=/home/jovyan/.local/bin:\$PATH &&
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#if $mode.mode_select == 'scratch':
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@@ -95,4 +96,3 @@
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You can import data into the notebook via a predefined `get()` function and write results back to Galaxy with a `put()` function.
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</help>
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</tool>
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