Fix $HOME for some gxit requiring a specific one

This commit is contained in:
Anthony Bretaudeau
2021-03-09 15:10:41 +01:00
parent 1eb0628046
commit b0fc281d54
4 changed files with 8 additions and 4 deletions
@@ -29,6 +29,7 @@
## change into the directory where the notebooks are located
cd ./jupyter/ &&
export HOME=/home/jovyan/ &&
export PATH=/home/jovyan/.local/bin:\$PATH &&
#if $mode.mode_select == 'scratch':
@@ -95,12 +96,12 @@
You can import data into the notebook via a predefined `get()` function and write results back to Galaxy with a `put()` function.
The Climate version of the Jupyter Notebook offers a lot of preinstalled tools for climate science. The list of packages is based on what is available
The Climate version of the Jupyter Notebook offers a lot of preinstalled tools for climate science. The list of packages is based on what is available
on the [Pangeo](http://pangeo.io/) platform and [Pangeo stacks](https://pangeo-data.github.io/pangeo-stacks/).
- **Core scipy packages**: numpy, scipy, matplotlib, pandas, xarray, sparse and sympy
- **Data science**: scikit-image, scikit-learn, dask-ml, tensorflow, keras, pytorch-cpu, dask_labextension
- **Visualization**: holoviews, panel, geoviews, hvplot, geoviews, datashader, seaborn, altair, descartes, folium, vega,
- **Visualization**: holoviews, panel, geoviews, hvplot, geoviews, datashader, seaborn, altair, descartes, folium, vega,
vega_datasets, palettable, cmocean,plotly, psy-maps, psy-reg, psyplot, psyplot-gui, psy-maps, psy-reg,
geopy, branca
- **Geospatial**: iris, cartopy, basemap, basemap-data-hires, geopandas, rasterio, netcdf4, erddapy, pydap, h5py, h5netcdf, regionmask and rio-cogeo
@@ -8,7 +8,9 @@
</entry_point>
</entry_points>
<command><![CDATA[
export HOME=/root &&
forever start `which ethercalc` --cors &
bash $wait_script
&&
@@ -26,6 +26,7 @@
## change into the directory where the notebooks are located
cd ./jupyter/ &&
export HOME=/home/jovyan/ &&
export PATH=/home/jovyan/.local/bin:\$PATH &&
#if $mode.mode_select == 'scratch':
+1 -1
View File
@@ -30,6 +30,7 @@
## change into the directory where the notebooks are located
cd ./jupyter/ &&
cp \${HOME}/examples/* ./ &&
export HOME=/home/jovyan/ &&
export PATH=/home/jovyan/.local/bin:\$PATH &&
#if $mode.mode_select == 'scratch':
@@ -95,4 +96,3 @@
You can import data into the notebook via a predefined `get()` function and write results back to Galaxy with a `put()` function.
</help>
</tool>