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2c85c6fee962f972722afc60781ee2090f3c48d1
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782 Commits
Author SHA1 Message Date
Anton Nekrutenko 2c85c6fee9 Preliminary commity for lca. Still in progress. 2009-01-19 12:12:36 -05:00
Guruprasad Anada 1a6342308a Push changes to Security from Central.. 2009-01-16 13:32:13 -05:00
Guruprasad Anada 50b46e60e3 Removed an option from grouping tool, which is now part of the LCA tool under Taxonomy. 2009-01-16 13:30:01 -05:00
Guruprasad Anada d4eef49e01 Updating security from central 2009-01-15 13:11:47 -05:00
Guruprasad Anada ee8779987e More changes to mutability tool. 2009-01-15 13:10:04 -05:00
Greg Von Kuster 19c0b7e30b merging from central 2009-01-15 11:03:19 -05:00
Greg Von Kuster b7aaa17bc3 Change History.copy() back to use datasets rather than active_datasets. Add checks in set_peek() to properly set peek on purged datasets. Fixes sharing a history that contains purged datasets. 2009-01-15 10:49:01 -05:00
Guruprasad Anada 918b4a8258 Push changeset from central to Security.. 
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 2009-01-15 10:46:17 -05:00
Guruprasad Anada d46171ea21 Fixed a bug in microsatellite mutability tool. 2009-01-15 10:42:22 -05:00
Nate Coraor cf71b75d4d merging heads 2009-01-14 09:00:18 -05:00
Guruprasad Anada e25946e9b9 Tool to find the least common ancestor added under Taxonomy section. 2009-01-13 12:18:08 -05:00
Greg Von Kuster df610a666c merging from central 2009-01-13 10:56:05 -05:00
Greg Von Kuster 051a78bc39 Add new tool config for flymine production server. 2009-01-13 10:55:08 -05:00
Greg Von Kuster 86c7a80c31 Add support for NCBI Blast XML data format. 2009-01-07 12:20:35 -05:00
Greg Von Kuster b7c0bbc280 merging from central 2009-01-07 12:19:58 -05:00
Guruprasad Anada 8a7392aa7a Pushing changes to security from central. 2009-01-06 11:12:53 -05:00
Guruprasad Anada cc80d63745 Added a new option to the grouping tool to facilitate picking of random entries from columns not chosen for either grouping or aggregate operations. 2009-01-06 11:11:24 -05:00
Nate Coraor d337613eeb megablast fix from Anton 2009-01-05 15:26:17 -05:00
Nate Coraor 6040c7b18a merge 2009-01-05 15:25:17 -05:00
Guruprasad Anada 10d6090e81 Pushing changes from central to Security. 2008-12-22 12:16:14 -05:00
Guruprasad Anada 8c7c765480 Modified sort options in grouping tool to work correctly on older and newer versions of unix sort. Also included functional tests. 2008-12-22 12:15:02 -05:00
Wen-Yu Chung 05513833f5 fix for short read score distribution tool. restore test data. passed functional tests in scofield 2008-12-19 14:28:09 -05:00
Wen-Yu Chung b31191d4bd fix for short read score distribution tool. restore test data. 2008-12-19 14:25:43 -05:00
Wen-Yu Chung 1da324ffb5 fixed for short read build distribution tool. remove unused arrays. 2008-12-19 12:28:02 -05:00
Wen-Yu Chung 170f9d2d77 fixed for short read build distribution tool. remove unused arrays. also update test data output. 2008-12-19 12:25:52 -05:00
Nate Coraor b6d561fb42 Allow users to download a selection of datasets directly from the library in an archive format of their choosing. 2008-12-15 16:37:54 -05:00
Greg Von Kuster dfd5e9827f Rename gbrowse_elegans to wormbase_test, add a config for the wormbase production server. 2008-12-15 10:37:39 -05:00
Greg Von Kuster d3b2a27cee merging from central 2008-12-15 10:37:16 -05:00
Greg Von Kuster 7a5203fd65 Attempting to merge conflicts. 2008-12-15 08:58:33 -05:00
Greg Von Kuster b432fd166d merging heads 2008-12-15 08:55:16 -05:00
Greg Von Kuster 0b85700945 merging from central 2008-12-13 23:36:47 -05:00
Greg Von Kuster 2647f72e4a Add ability for data_source tools to append parameters passed in the initial response to the value of URL prior to Galaxy's post to the URL. This is a cleaner method for Biomart and also gets GBrowse to wrok. 2008-12-13 23:35:29 -05:00
Guruprasad Anada 7d48102b82 merging heads 2008-12-12 12:16:41 -05:00
Guruprasad Anada 9a0953f1f1 Added more test-cases to GOPS JOIN to include cases with different cut-offs for overlap. 2008-12-12 12:12:59 -05:00
Greg Von Kuster f83ff13b78 Increase the version in the grouping tool due to previously changed output, change the output and increase the version of the gsummary tool. 2008-12-05 09:01:22 -05:00
Greg Von Kuster b998baa2f4 merging from central 2008-12-05 09:01:00 -05:00
Daniel Blankenberg 561645665d Merging Heads 2008-12-04 15:21:06 -05:00
Daniel Blankenberg 18f4037ba2 Update GMAJ help. 2008-12-04 15:09:57 -05:00
Guruprasad Anada 8da17294a8 Bug fixes to compare, group and filter tools. 
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removed.
 2008-12-02 11:54:13 -05:00
Guruprasad Anada b88df9bdc3 Bug fixes for compare, Group and filter tools. 2008-12-02 11:41:25 -05:00
Greg Von Kuster c3e009142a merging from central 2008-12-02 10:55:17 -05:00
Greg Von Kuster ffa719a9ab Call set_size() before set_peek() on datasets, changes to set_peek() to not read entire files for some datatypes. 2008-12-02 10:50:54 -05:00
Daniel Blankenberg 52e1d4686d Merging heads 2008-11-24 11:20:18 -05:00
Daniel Blankenberg 7e0479473c Update GMAJ to latest beta. 2008-11-24 11:19:48 -05:00
Greg Von Kuster eeeab78b32 Fixes for accessing libraries from the analysis view. 2008-11-21 09:21:39 -05:00
Wen-Yu Chung 29f1495a2c Fix fasta tools bugs. The tool is able to handle lines with tabs only. 2008-11-18 11:31:46 -05:00
Wen-Yu Chung 2ee04d24af (no commit message) 2008-11-18 11:23:09 -05:00
Wen-Yu Chung 8733106b28 Update poisson test tool for R warnings. 2008-11-14 13:22:04 -05:00
Wen-Yu Chung 87a68ea595 update poisson test tool for R warnings. 2008-11-14 13:21:02 -05:00
Greg Von Kuster 32b4b77f74 Missed translating the primaryTable data type from UCSC in my last commit. 2008-11-13 15:17:42 -05:00