opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-24 16:30:27 +08:00
Code Issues Packages Projects Releases Wiki Activity

Merging heads

Browse Source
This commit is contained in:
Daniel Blankenberg
2008-11-24 11:20:18 -05:00
parent eeeab78b32 7e0479473c
commit 52e1d4686d
2 changed files with 3 additions and 1 deletions
Download Patch File Download Diff File Expand all files Collapse all files
static/gmaj/gmaj.jar
BIN
View File
Binary file not shown.
tools/visualization/GMAJ.xml
+3 -1
View File
@@ -46,6 +46,7 @@
<option name="MAF File" value="maf">
<option name="Invalid MAF version (maf_version)" value="maf_version"/>
<option name="Skipping unsupported paragraph (maf_paragraph)" value="maf_paragraph"/>
<option name="Unrecognized character found in alignment (bad_char_all)" value="bad_char_all"/>
<option name="Skipping all reconstruction scores: no species specified (recon_noseq)" value="recon_noseq"/>
<option name="Skipping reconstruction scores in blocks with missing row (recon_missing)" value="recon_missing"/>
<option name="The first row in some blocks is not the specified reference sequence (refseq_not_first)" value="refseq_not_first"/>
@@ -75,7 +76,7 @@
<option name="Score shading is not yet supported (score_shading)" value="score_shading"/>
</option>
<option name="Red Flags" value="red">
<option name="Sequence name in annotation file does not match name in MAF (seqname_mismatch)" value="seqname_mismatch"/>
<option name="Assuming that annotations in file ___ are for species ___ (seqname_fix_all)" value="seqname_fix_all"/>
<option name="BED start or end &lt; 0 (bed_coord)" value="bed_coord"/>
<option name="GFF start or end &lt; 1 (gff_coord)" value="gff_coord"/>
<option name="Missing item name for URL substitution (url_subst)" value="url_subst"/>
@@ -87,6 +88,7 @@
<option name="Skipping blocks for export where reference sequence is hidden or all gaps (export_skip)" value="export_skip"/>
<option name="Possible parse error: token ends with an escaped quote (escaped_quote)" value="escaped_quote"/>
<option name="Draggable panel dividers will not be sticky (no_sticky)" value="no_sticky"/>
<option name="Selecting a large block may be very slow (big_block)" value="big_block"/>
</option>
</option>
</options>