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Fixed a bug in microsatellite mutability tool.

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This commit is contained in:
Guruprasad Anada
2009-01-15 10:42:22 -05:00
parent 87a77c62f2
commit d46171ea21
1 changed files with 0 additions and 10 deletions
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tools/regVariation/microsats_mutability.py
-10
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@@ -409,19 +409,9 @@ def main():
blk=0
win=0
linestr=""
ff=open("junkmabc","w")
if region == 'win':
"""
sorted_infile = tempfile.NamedTemporaryFile()
if winspecies == 1:
cmdline = "sort -n -k 3"+" -o "+sorted_infile.name+" "+infile
elif winspecies == 2:
cmdline = "sort -n -k 10"+" -o "+sorted_infile.name+" "+infile
os.system(cmdline)
print >>ff, "Finished sorting"
"""
msats = NiceReaderWrapper( fileinput.FileInput( infile ),
chrom_col = speciesind,
start_col = speciesind+1,