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Author SHA1 Message Date
guerler 15480dc4f1 Disable automated history creation in data tool parameters 2015-05-18 18:39:47 -04:00
Dannon Baker 55bc3ebb8a Merge pull request #265 from jmchilton/collection_fixes_15.05_2 
[15.05] Fix implicit output collection names when mapping over collections.
 2015-05-15 13:02:08 -04:00
John Chilton 2cac7e817b Fix implicit output collection names when mapping over collections. 2015-05-15 11:06:19 -04:00
Dannon Baker 41e7118a2a Merge pull request #262 from jmchilton/collection_fixes_15.05 
[15.05] Collection-y fixes for 15.05
 2015-05-15 09:56:13 -04:00
John Chilton 4ad4688fde Fix label's on output collections. 
Thanks to @kellrott for reporting the issue.

https://trello.com/c/Qc2A4rsw
 2015-05-14 16:33:39 -04:00
John Chilton fbaba4b463 Fix auto-hiding collections when mapping over tools. 
Broken by that moron @jmchilton in 44f7317fa5.
 2015-05-14 16:33:39 -04:00
Martin Cech 47aad5087f Merge pull request #260 from bgruening/release_15.05 
Pin the IPython Docker Image to the 15.05.
 2015-05-14 15:36:07 -04:00
Björn Grüning 8965dd2cbf Pin the IPython Docker Image to the 15.05. 
From now on we pin every Galaxy release to a special ipython-notebook image.
 2015-05-14 21:23:27 +02:00
Nate Coraor 0090d9a8cd Bump verison to 15.05 2015-05-13 17:09:38 -04:00
Nate Coraor 78ac97f9e9 Merge pull request #253 from jmchilton/release_notes_15.05 
[15.05] First crack at dev release notes for 15.05 release.
 2015-05-13 16:54:59 -04:00
Nate Coraor 981f175718 Merge pull request #256 from dannon/release_15.05 
[15.05] Fix workflow parameter/action display
 2015-05-13 16:54:34 -04:00
Dannon Baker cfea0386f4 Missed one. 2015-05-13 15:47:56 -04:00
Dannon Baker 0a7f50dbaa Change sanitization of workflow pja's for display in workflow/run to happen in get_short_str, trusting that output. This is probably still overzealous, and we should check if there's a way to exploit tool.output_names (and if not, pull back on that sanitization). 2015-05-13 15:45:01 -04:00
Martin Cech e44a0150ef Merge pull request #7 from natefoo/release_notes_15.05 
Add a stub for older release announcements
 2015-05-13 15:33:59 -04:00
Nate Coraor 959660f5c2 Add a stub for older release announcements. 2015-05-13 15:17:47 -04:00
John Chilton 5111e43b9a Add missing release to doc index. 2015-05-13 14:49:54 -04:00
Martin Cech 7f2922f9e2 update to transparent logo 2015-05-13 14:43:21 -04:00
John Chilton b1e6700087 Fill out doc stubs for releases through 13.01. 
These pages have the header and footer and links to the relevant pages on the wiki.

These are the ones on github and the ones that got at least a couple of the most serious bug fixes announced over the last year.
 2015-05-13 14:39:24 -04:00
John Chilton 74cba741bc Merge pull request #255 from guerler/fix_none_selection 
[15.05] Accept 'None' as valid value for selections
 2015-05-13 13:24:21 -05:00
John Chilton 7bd8a20cb0 Refactor thanks from annoucements out. 2015-05-13 13:43:21 -04:00
John Chilton 11e80d52f6 Merge pull request #6 from martenson/patch-4 
add some ads
 2015-05-13 12:40:56 -05:00
Martin Cech ee0b405268 add some ads 2015-05-13 13:38:49 -04:00
John Chilton a893835783 Merge pull request #4 from martenson/patch-2 
update logo
 2015-05-13 12:28:59 -05:00
Martin Cech b64da97e1b shrink to 25%; switch to projectless version 2015-05-13 13:11:42 -04:00
John Chilton 59d2e9d255 Merge pull request #5 from martenson/patch-3 
link to wiki SourceCode instead of getgalaxy.org
 2015-05-13 12:03:48 -05:00
Dannon Baker 30557c0705 Fix display regression from overzealous sanitzation in c8a71c7e89 2015-05-13 12:57:23 -04:00
Martin Cech bb3126faa3 link to wiki SourceCode instead of getgalaxy.org 2015-05-13 12:50:45 -04:00
Martin Cech 7708639458 update logo 2015-05-13 12:45:40 -04:00
John Chilton c7650dd209 WIP: Announcement updates. 2015-05-13 11:51:48 -04:00
guerler e5d19d9999 Accept 'None' as valid value 2015-05-13 11:24:32 -04:00
John Chilton 5a2eed349b WIP: Experiment porting release announcement to rST/RTD. 2015-05-13 11:11:03 -04:00
Nate Coraor ada867bb00 Merge pull request #254 from carlfeberhard/fix.history-state 
[15.05] Histories, API: do not consider deleted datasets when calculating his…
 2015-05-13 09:22:41 -04:00
John Chilton cd75d6b3f9 Merge pull request #3 from blankenberg/patch-1 
all data source tools go to _top
 2015-05-12 15:58:34 -05:00
Carl Eberhard d1c14bd1a1 Histories, API: do not consider deleted datasets when calculating history state; test 2015-05-12 16:57:17 -04:00
Daniel Blankenberg 92362dcc07 all data source tools go to _top 2015-05-12 16:39:23 -04:00
John Chilton 4e1324e432 Add PR7 to release notes (caught by @bgruening). 
... small updates to bootstrap history script for reuse in planemo.
 2015-05-12 12:15:56 -04:00
John Chilton 660e9a7b53 Merge pull request #2 from martenson/patch-1 
add some trello card links to release notes
 2015-05-12 10:19:03 -05:00
Martin Cech 6766e47244 add some trello card links 2015-05-12 11:16:31 -04:00
John Chilton 671ea37b20 More updates to release 15.05 notes based on @nsoranzo's comments. 2015-05-12 11:05:09 -04:00
John Chilton 6ac018ef22 Suggestions for release notes 15.05 from @nsoranzo. 2015-05-12 10:29:51 -04:00
John Chilton 3e5b5e93d8 Add more links to 15.05 release notes - Trello and otherwise. 2015-05-12 09:29:42 -04:00
John Chilton bb7fb089fe First crack at release notes for 15.05. 2015-05-11 23:05:56 -04:00
Nate Coraor 32edb07930 Merge pull request #247 from blankenberg/baseurl-fix 
[15.05] Fixes for BaseURLToolParameter. Data source tools will now work again…
 2015-05-11 16:14:35 -04:00
John Chilton 781fb12a27 Merge pull request #252 from blankenberg/pysam-fix 
[15.05] Supress pysam binary incompatibility warning when using datatypes in binary.py.
 2015-05-11 14:27:54 -05:00
Daniel Blankenberg 830b9f4d35 Supress pysam binary incompatibility warning when using datatypes in binary.py. 2015-05-11 15:04:09 -04:00
Daniel Blankenberg 539df779d9 Merge pull request #251 from jmchilton/ts_test_fixes 
[15.05] Tool shed test fixes for 15.05.
 2015-05-11 12:23:25 -04:00
John Chilton 4d69f2e8c0 Fix a variety of tool shed tests broken with a24e206. 2015-05-11 11:57:05 -04:00
John Chilton 593d38fcf0 Fix a variety of tool shed tests broken with PR #75. 2015-05-11 11:56:26 -04:00
Dannon Baker 9d4099ac36 Merge pull request #245 from blankenberg/tool-data-table-enhancements 
[15.05] Allow a tool data table to declare that duplicate entries are not allowed.
 2015-05-08 11:34:41 -04:00
Daniel Blankenberg a3d694de70 Fixes for BaseURLToolParameter. Data source tools will now work again. Restores consistency to various ways that one might get the parameter value. 2015-05-08 09:30:04 -04:00