John Chilton b1e6700087 Fill out doc stubs for releases through 13.01.
These pages have the header and footer and links to the relevant pages on the wiki.

These are the ones on github and the ones that got at least a couple of the most serious bug fixes announced over the last year.
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2015-05-07 12:57:21 -04:00
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2015-03-26 16:46:57 -04:00
2014-11-04 13:58:42 -05:00
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.. figure:: https://wiki.galaxyproject.org/Images/GalaxyLogo?action=AttachFile&do=get&target=galaxy_project_logo.jpg
   :alt: Galaxy Logo

The latest information about Galaxy is available via `http://galaxyproject.org/ <http://galaxyproject.org/>`__

Galaxy Quickstart
=================

Galaxy requires Python 2.6 or 2.7. To check your python version, run:

.. code:: console

    $ python -V
    Python 2.7.3

Start Galaxy:

.. code:: console

    $ sh run.sh

Once Galaxy completes startup, you should be able to view Galaxy in your
browser at:

http://localhost:8080

You may wish to make changes from the default configuration. This can be
done in the ``config/galaxy.ini`` file. Tools can be either installed
from the Tool Shed or added manually. For details please see the Galaxy
wiki:

https://wiki.galaxyproject.org/Admin/Tools/AddToolFromToolShedTutorial

Not all dependencies are included for the tools provided in the sample
``tool_conf.xml``. A full list of external dependencies is available at:

https://wiki.galaxyproject.org/Admin/Tools/ToolDependencies

Issues
======

Issues can be submitted to trello via the `galaxyproject
website <http://galaxyproject.org/trello/>`__ and viewed on the `Galaxy
Trello Board <https://trello.com/b/75c1kASa/galaxy-development>`__


Galaxy Development
==================

Galaxy welcomes new development! There is extensive documentation on developing
with Galaxy on the `wiki <https://wiki.galaxyproject.org/Develop>`__.

Source Repository
-----------------

Galaxy development has moved to `Github
<https://github.com/galaxyproject/galaxy>`__.

**Developers** should develop against the ``dev`` branch in the Github
repository.

**Deployers** can continue to pull Galaxy changes from Bitbucket without
interruption. Alternatively, deployers can track the ``master`` branch in
Github.

Syncing a Fork
--------------

If you fork Galaxy to work on it, you may be interested in keeping your copy
up to date with respect to the main repository. Github has `good documentation
<https://help.github.com/articles/syncing-a-fork/>`__ on this.

.. code:: console

    $ git remote add upstream https://github.com/galaxyproject/galaxy
    $ git fetch upstream
    $ git checkout dev
    $ git merge upstream/dev

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