Nate Coraor f8ce6fc19d merge

2009-01-30 11:39:29 -05:00

..

annotation_profiler

Fix annotation profiler interpreter to be python, not python2.4

2009-01-30 11:37:51 -05:00

data_destination

merging from central

2008-10-28 11:28:15 -04:00

data_source

merging from central

2009-01-22 08:51:48 -05:00

emboss_5

Forgot to eliminate the emboss path...

2008-04-25 19:07:26 +00:00

encode

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

extract

Added Validator to a bunch of tools..

2008-10-17 13:02:26 -04:00

fasta_tools

remove the usage of hast tables in the fasta-tools

2009-01-19 15:47:02 -05:00

filters

Bug fixes for compare, Group and filter tools.

2008-12-02 11:41:25 -05:00

hyphy

Adding modified hyphy functional test output files, which have changed as the new version of HYPHY is installed on Galaxy. Also changing version numbers for all the affected tools.

2009-01-27 16:17:22 -05:00

maf

merge

2009-01-27 14:49:21 -05:00

metag_tools

Add support for NCBI Blast XML data format.

2009-01-07 12:20:35 -05:00

new_operations

Added more test-cases to GOPS JOIN to include cases with different cut-offs for overlap.

2008-12-12 12:12:59 -05:00

plotting

updated bar charter to use png instead of pdf

2009-01-22 12:06:29 -05:00

regVariation

Adding modified hyphy functional test output files, which have changed as the new version of HYPHY is installed on Galaxy. Also changing version numbers for all the affected tools.

2009-01-27 16:17:22 -05:00

sr_mapping

Finally remerged changeset. Should be good now.

2009-01-21 16:48:54 -05:00

stats

Adding modified hyphy functional test output files, which have changed as the new version of HYPHY is installed on Galaxy. Also changing version numbers for all the affected tools.

2009-01-27 16:17:22 -05:00

taxonomy

Lca commit. The tool itself is written by guru with minor modification made by me.

2009-01-21 09:51:06 -05:00

validation

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

visualization

Ironed out nasty exceptions thrown on invalid genetrack outputs. Still need a way to resolve the optional 2nd output (exported intervals), and ensure the user picks at least 1 coverage dataset or 1 feature dataset.

2009-01-27 17:10:30 -05:00