opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-24 16:30:27 +08:00
Code Issues Packages Projects Releases Wiki Activity

merge

Browse Source
This commit is contained in:
Nate Coraor
2009-01-27 14:49:21 -05:00
parent 66463bea79 4f9735fb31
commit 4f02a56abc
2 changed files with 8 additions and 8 deletions
Download Patch File Download Diff File Expand all files Collapse all files
eggs.ini
+2 -2
View File
@@ -55,12 +55,12 @@ pysqlite = _3.5.4_static
MySQL_python = _5.0.67_static
python_lzo = _static
flup = .dev_r2311
bx_python = _dev_r459
bx_python = _dev_r460
nose = .dev_r101
; source location, necessary for scrambling
[source]
bx_python = http://dist.g2.bx.psu.edu/bx-python_dist-r459.tar.bz2
bx_python = http://dist.g2.bx.psu.edu/bx-python_dist-r460.tar.bz2
Cheetah = http://voxel.dl.sourceforge.net/sourceforge/cheetahtemplate/Cheetah-1.0.tar.gz
DRMAA_python = http://gridengine.sunsource.net/files/documents/7/36/DRMAA-python-0.2.tar.gz
MySQL_python = http://superb-west.dl.sourceforge.net/sourceforge/mysql-python/MySQL-python-1.2.2.tar.gz http://mysql.mirrors.pair.com/Downloads/MySQL-5.0/mysql-5.0.67.tar.gz
tools/maf/maf_filter.xml
+6 -6
View File
@@ -104,22 +104,22 @@ def maf_block_pass_filter( maf_block ):
#if $len( $maf_filter['species1_attributes']['filter_condition'] ) == 0:
#continue
#end if
primary_component = maf_block.get_component_by_src_start( """$maf_filter['species1'].encode( 'string_escape' )""".decode( 'string_escape' ) )
primary_component = maf_block.get_component_by_src_start( """$maf_filter['species1'].value.encode( 'string_escape' )""".decode( 'string_escape' ) )
if primary_component is not None:
#if $maf_filter['species1_attributes']['species1_attribute_type'] == 'attribute_chr':
if primary_component.src.split( "." )[-1] $is_isnot_valid.get( $maf_filter['species1_attributes']['species1_is_isnot'].strip(), 'is in' ) """$maf_filter['species1_attributes']['species1_attribute'].encode( 'string_escape' )""".decode( 'string_escape' ).split( "," ):
if primary_component.src.split( "." )[-1] $is_isnot_valid.get( $maf_filter['species1_attributes']['species1_is_isnot'].value.strip(), 'is in' ) """$maf_filter['species1_attributes']['species1_attribute'].value.encode( 'string_escape' )""".decode( 'string_escape' ).split( "," ):
#else
if primary_component.strand $is_isnot_valid.get( $maf_filter['species1_attributes']['species1_is_isnot'].strip(), '==' ) """$maf_filter['species1_attributes']['species1_attribute'].encode( 'string_escape' )""".decode( 'string_escape' ):
if primary_component.strand $is_isnot_valid.get( $maf_filter['species1_attributes']['species1_is_isnot'].value.strip(), '==' ) """$maf_filter['species1_attributes']['species1_attribute'].value.encode( 'string_escape' )""".decode( 'string_escape' ):
#end if
#for $filter_condition in $maf_filter['species1_attributes']['filter_condition']:
secondary_component = maf_block.get_component_by_src_start( """$filter_condition['species2'].encode( 'string_escape' )""".decode( 'string_escape' ) )
secondary_component = maf_block.get_component_by_src_start( """$filter_condition['species2'].value.encode( 'string_escape' )""".decode( 'string_escape' ) )
#if $filter_condition['species2_attributes']['species2_attribute_type'] == 'attribute_chr':
if secondary_component is not None:
if not ( secondary_component.src.split( "." )[-1] $is_isnot_valid.get( $filter_condition['species2_attributes']['species2_is_isnot'].strip(), 'is in' ) """$filter_condition['species2_attributes']['species2_attribute'].encode( 'string_escape' )""".decode( 'string_escape' ).split( "," ) ):
if not ( secondary_component.src.split( "." )[-1] $is_isnot_valid.get( $filter_condition['species2_attributes']['species2_is_isnot'].value.strip(), 'is in' ) """$filter_condition['species2_attributes']['species2_attribute'].value.encode( 'string_escape' )""".decode( 'string_escape' ).split( "," ) ):
return False
#else:
if secondary_component is not None:
if not ( secondary_component.strand $is_isnot_valid.get( $filter_condition['species2_attributes']['species2_is_isnot'].strip(), '==' ) """$filter_condition['species2_attributes']['species2_attribute'].encode( 'string_escape' )""".decode( 'string_escape' ) ):
if not ( secondary_component.strand $is_isnot_valid.get( $filter_condition['species2_attributes']['species2_is_isnot'].value.strip(), '==' ) """$filter_condition['species2_attributes']['species2_attribute'].value.encode( 'string_escape' )""".decode( 'string_escape' ) ):
return False
#end if
#end for