Adding modified hyphy functional test output files, which have changed as the new version of HYPHY is installed on Galaxy. Also changing version numbers for all the affected tools.

tools/hyphy/hyphy_branch_lengths_wrapper.xml

@@ -1,4 +1,4 @@
-<?xml version="1.0"?>
+<?xml version="1.1.0"?>
 <tool name="Branch Lengths" id="hyphy_branch_lengths_wrapper1">
 	
 	<description>Estimation</description>

tools/hyphy/hyphy_dnds_wrapper.xml

@@ -1,4 +1,4 @@
-<?xml version="1.0"?>
+<?xml version="1.1.0"?>
 <tool name="dN/dS Ratio" id="hyphy_dnds_wrapper1">
 	
 	<description>Estimation</description>

tools/hyphy/hyphy_nj_tree_wrapper.xml

@@ -1,4 +1,4 @@
-<?xml version="1.0"?>
+<?xml version="1.1.0"?>
 <tool name="Neighbor Joining Tree" id="hyphy_nj_tree_wrapper1">
     
     <description>Builder</description>

tools/regVariation/microsats_mutability.xml

@@ -1,4 +1,4 @@
-<tool id="microsats_mutability1" name="Estimate microsatellite mutability" version="1.0.0">
+<tool id="microsats_mutability1" name="Estimate microsatellite mutability" version="1.1.0">
   <description>by specified attributes</description>
   <command interpreter="python">
   	microsats_mutability.py 

tools/stats/grouping.xml

@@ -1,4 +1,4 @@
-<tool id="Grouping1" name="Group" version="1.4.0">
+<tool id="Grouping1" name="Group" version="1.5.0">
   <description>data by a column and perform aggregate operation on other columns.</description>
   <command interpreter="python">
     grouping.py