Jeremy Goecks bd8809e00d Add version command information to Cuff* tools.

2013-08-23 10:49:06 -04:00

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annotation_profiler

Add information for UCSC data to annotation profiler.

2011-11-16 10:40:55 -05:00

data_destination

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data_source

Fix inadvertently committed Galaxy upload tool config setting ajax upload to false.

2013-07-12 11:13:27 -04:00

discreteWavelet

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

encode

Tool help updates.

2011-09-21 04:11:07 -04:00

evolution

Make wrapper compatible with python 2.5.

2013-01-23 12:32:05 -05:00

extract

Replaced "query" with "dataset" in a number of tool definition XML files.

2013-01-14 16:13:54 -08:00

fasta_tools

Enable fasta_to_len conversion to use only first word in title; this is standards compliant and used by default for automatic conversion.

2012-03-08 11:09:14 -05:00

fastq

tool tip fix for fastq summary and sorter

2013-03-19 11:50:03 -04:00

fastx_toolkit

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

filters

Merged in ghuls/galaxy-central/sort (pull request #172)

2013-08-07 13:33:27 -04:00

gatk

Covert more duplicated GATK wrapper code to macros.

2013-03-22 00:41:08 -05:00

genetrack

Update GeneTrack help.

2011-11-10 11:54:50 -05:00

genomespace

Fix for GenomeSpace Export root directory listing.

2013-06-20 16:24:33 -04:00

hyphy

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indels

Remove imports of the sets module, set has been a standard type since 2.4. There are more in tools, but they check for the existence of set() first, so will not raise a warning.

2010-09-27 21:35:03 -04:00

maf

Make maf-to-bed object-store aware

2013-03-06 12:40:31 -05:00

meme

Specify meme requirement for fimo tool.

2012-02-02 21:29:30 -06:00

metag_tools

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

multivariate_stats

Fixed a bug in PCA tool - standard deviation & prop variance values are now sorted by PC order.

2011-07-15 10:33:02 -04:00

mutation

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

new_operations

Subtract query tool: make ignoring empty end columns and whitespace optional.

2013-02-07 14:46:49 -05:00

next_gen_conversion

Fixed error in solid2fasta.xml preventing help text from displaying.

2012-09-04 10:15:18 -04:00

ngs_rna

Add version command information to Cuff* tools.

2013-08-23 10:49:06 -04:00

ngs_simulation

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

peak_calling

Tool help updates.

2011-11-14 13:26:29 -05:00

phenotype_association

Update functional test parameters so tests will pass.

2013-01-22 15:54:49 -05:00

plotting

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

regVariation

Require Python 2.6+ and remove various compatibility patches for 2.4 and 2.5

2013-04-09 11:57:38 -04:00

rgenetics

clean up fastqc updates a tiny bit

2013-05-30 15:01:29 +10:00

samtools

See previous commit message.

2013-07-30 12:54:02 -04:00

solid_tools

Fix tool tip for compute quality statistics

2013-03-19 12:04:24 -04:00

sr_assembly

Velvet wrapper: fix typos, tabs -> spaces, spacing

2011-05-27 11:01:46 +02:00

sr_mapping

Bowtie2: Added quotation marks to group selection and added basic tool test

2013-08-07 14:17:43 -04:00

stats

Require Python 2.6+ and remove various compatibility patches for 2.4 and 2.5

2013-04-09 11:57:38 -04:00

taxonomy

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

validation

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vcf_tools

Fix for vcf_extract tool test

2011-03-02 09:40:10 -05:00

visualization

Performance enhancements for Build custom track for UCSC genome browser tool.

2012-10-16 15:25:01 -04:00