Jeremy Goecks bd8809e00d Add version command information to Cuff* tools.

2013-08-23 10:49:06 -04:00

..

cuffcompare_wrapper.py

See previous commit message. Note that cufflinks reverts to 0.0.6, not 0.0.7, due to a version increase that came after the changes that are being rolled back.

2013-07-30 12:50:29 -04:00

cuffcompare_wrapper.xml

Add version command information to Cuff* tools.

2013-08-23 10:49:06 -04:00

cuffdiff_wrapper.xml

Add version command information to Cuff* tools.

2013-08-23 10:49:06 -04:00

cufflinks_wrapper.py

See previous commit message. Note that cufflinks reverts to 0.0.6, not 0.0.7, due to a version increase that came after the changes that are being rolled back.

2013-07-30 12:50:29 -04:00

cufflinks_wrapper.xml

Add version command information to Cuff* tools.

2013-08-23 10:49:06 -04:00

cuffmerge_wrapper.py

See previous commit message. Note that cufflinks reverts to 0.0.6, not 0.0.7, due to a version increase that came after the changes that are being rolled back.

2013-07-30 12:50:29 -04:00

cuffmerge_wrapper.xml

See previous commit message. Note that cufflinks reverts to 0.0.6, not 0.0.7, due to a version increase that came after the changes that are being rolled back.

2013-07-30 12:50:29 -04:00

express_wrapper.xml

Replaced "binary" with "package" for eXpress according to my listsrv report of not picking up the correct environmental variables.

2013-06-27 13:50:57 -07:00

filter_transcripts_via_tracking.py

Add 'filter transcripts via tracking' tool to RNA-seq tools. This tool is useful for operating on output files from cufftools suite.

2010-05-10 12:42:05 -04:00

filter_transcripts_via_tracking.xml

Add 'filter transcripts via tracking' tool to RNA-seq tools. This tool is useful for operating on output files from cufftools suite.

2010-05-10 12:42:05 -04:00

tophat2_wrapper.xml

Automated merge of next-stable branch

2013-08-06 18:07:15 -04:00

tophat_color_wrapper.xml

Rework some duplication out tophat wrappers using macros. This dmeonstrates how macros can reduce duplication inside a file (e.g. the dbKeyActions macro) and between files (e.g. the own_junctionsConditional macro).

2013-02-23 14:09:53 -06:00

tophat_macros.xml

Rework some duplication out tophat wrappers using macros. This dmeonstrates how macros can reduce duplication inside a file (e.g. the dbKeyActions macro) and between files (e.g. the own_junctionsConditional macro).

2013-02-23 14:09:53 -06:00

tophat_wrapper.py

Move implementation of from_work_dir attribute from job finish to job command line so that outputs are available earlier. This provides compatibility of attribute when setting metadata externally. Update Tophat wrapper to act as exemplar for attribute use.

2012-07-20 13:18:54 -04:00

tophat_wrapper.xml

Add requirements tags to tophat wrapper.

2013-08-06 10:59:43 -04:00

trinity_all.xml

Removed --full_cleanup as galaxy deletes the job's working directory. Changed the memory for Jellyfish to 10G from 100G. Probably better as a default value.

2013-04-04 01:16:09 -04:00