Greg Von Kuster 987df32669 Fix for rendering tools / workflows in target frames, also elimnate the Workflow link in the tool panel as we're now using the menu bar.

2009-02-23 13:52:34 -05:00

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annotation_profiler

Fix annotation profiler interpreter to be python, not python2.4

2009-01-30 11:37:51 -05:00

data_destination

merging from central

2008-10-28 11:28:15 -04:00

data_source

Fix for rendering tools / workflows in target frames, also elimnate the Workflow link in the tool panel as we're now using the menu bar.

2009-02-23 13:52:34 -05:00

emboss_5

Forgot to eliminate the emboss path...

2008-04-25 19:07:26 +00:00

encode

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

extract

Added Validator to a bunch of tools..

2008-10-17 13:02:26 -04:00

fasta_tools

remove the usage of hast tables in the fasta-tools

2009-01-19 15:47:02 -05:00

fastx_toolkit

Integration of Assaf Gordon's Solexa toolkit into Galaxy - (all tools except 3 are working fine).

2009-02-20 14:17:46 -05:00

filters

restoring original files

2009-02-10 11:54:53 -05:00

hyphy

Fixes to get functional tests working.

2009-02-03 18:34:27 -05:00

maf

Allow workflows that contain tools that had parameters added to them after the workflow was created to be edited. Workflows containing tools with added parameters can still not be run until after they are edited and saved. Default values are provided in the workflow building mode.

2009-02-04 14:55:45 -05:00

metag_tools

Add support for NCBI Blast XML data format.

2009-01-07 12:20:35 -05:00

new_operations

Added more test-cases to GOPS JOIN to include cases with different cut-offs for overlap.

2008-12-12 12:12:59 -05:00

plotting

updated bar charter to use png instead of pdf

2009-01-22 12:06:29 -05:00

regVariation

Fixes to get functional tests working.

2009-02-03 18:34:27 -05:00

sr_mapping

A simple tool for merging columns. Surprisingly useful for some analyses and also requested by a user lest Friday

2009-02-09 23:57:41 -05:00

stats

Adding modified hyphy functional test output files, which have changed as the new version of HYPHY is installed on Galaxy. Also changing version numbers for all the affected tools.

2009-01-27 16:17:22 -05:00

taxonomy

Lca commit. The tool itself is written by guru with minor modification made by me.

2009-01-21 09:51:06 -05:00

validation

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

visualization

Using deprecated sha module in place of hashlib to keep compatibility with python2.4

2009-02-05 15:34:31 -05:00