Jeremy Goecks ee9c75e09f Handle Tophat2 fusion-ignore-chromosome parameter correctly.

2012-06-11 08:49:31 -04:00

..

cuffcompare_wrapper.py

Better error message when bias correction/sequence data cannot be used in Cufflinks/compare/merge/diff.

2012-02-14 12:27:47 -05:00

cuffcompare_wrapper.xml

Update version support information in Cuff* wrappers.

2012-02-02 10:03:02 -05:00

cuffdiff_wrapper.py

Better error message when bias correction/sequence data cannot be used in Cufflinks/compare/merge/diff.

2012-02-14 12:27:47 -05:00

cuffdiff_wrapper.xml

Update Cuffdiff min-alignment-count default.

2012-04-28 22:21:30 -04:00

cufflinks_wrapper.py

Better error message when bias correction/sequence data cannot be used in Cufflinks/compare/merge/diff.

2012-02-14 12:27:47 -05:00

cufflinks_wrapper.xml

Update default values for Cufflinks' parameters.

2012-02-06 09:29:48 -05:00

cuffmerge_wrapper.py

Add necessary space after threads option in Cuffmerge.

2012-03-08 08:37:20 -05:00

cuffmerge_wrapper.xml

Update version support information in Cuff* wrappers.

2012-02-02 10:03:02 -05:00

filter_transcripts_via_tracking.py

Add 'filter transcripts via tracking' tool to RNA-seq tools. This tool is useful for operating on output files from cufftools suite.

2010-05-10 12:42:05 -04:00

filter_transcripts_via_tracking.xml

Add 'filter transcripts via tracking' tool to RNA-seq tools. This tool is useful for operating on output files from cufftools suite.

2010-05-10 12:42:05 -04:00

tophat2_wrapper.py

Handle Tophat2 fusion-ignore-chromosome parameter correctly.

2012-06-11 08:49:31 -04:00

tophat2_wrapper.xml

Handle Tophat2 fusion-ignore-chromosome parameter correctly.

2012-06-11 08:49:31 -04:00

tophat_color_wrapper.xml

Clearer explanation and help for default vs. full parameter settings.

2012-05-30 19:47:40 -04:00

tophat_wrapper.py

Revert Tophat wrapper due to parameter incompatibility issues.

2012-04-30 11:41:04 -04:00

tophat_wrapper.xml

Clearer explanation and help for default vs. full parameter settings.

2012-05-30 19:47:40 -04:00

trinity_all.xml

Update Trinity wrapper to support most recent versions.

2012-04-23 15:29:37 -04:00