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Update Cuffdiff min-alignment-count default.

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Jeremy Goecks
2012-04-28 22:21:30 -04:00
parent 7c40df458e
commit 633c3cb9d5
1 changed files with 1 additions and 1 deletions
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tools/ngs_rna/cuffdiff_wrapper.xml
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@@ -89,7 +89,7 @@
</conditional>
<param name="fdr" type="float" value="0.05" label="False Discovery Rate" help="The allowed false discovery rate."/>
<param name="min_alignment_count" type="integer" value="1000" label="Min Alignment Count" help="The minimum number of alignments in a locus for needed to conduct significance testing on changes in that locus observed between samples."/>
<param name="min_alignment_count" type="integer" value="10" label="Min Alignment Count" help="The minimum number of alignments in a locus for needed to conduct significance testing on changes in that locus observed between samples."/>
<param name="do_normalization" type="select" label="Perform quartile normalization" help="Removes top 25% of genes from FPKM denominator to improve accuracy of differential expression calls for low abundance transcripts.">
<option value="No">No</option>
<option value="Yes">Yes</option>