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Update default values for Cufflinks' parameters.

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Jeremy Goecks
2012-02-06 09:29:48 -05:00
parent 96a370514b
commit 89072cd220
1 changed files with 2 additions and 2 deletions
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tools/ngs_rna/cufflinks_wrapper.xml
+2 -2
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@@ -52,8 +52,8 @@
<inputs>
<param format="sam,bam" name="input" type="data" label="SAM or BAM file of aligned RNA-Seq reads" help=""/>
<param name="max_intron_len" type="integer" value="300000" min="1" max="600000" label="Max Intron Length" help=""/>
<param name="min_isoform_fraction" type="float" value="0.05" min="0" max="1" label="Min Isoform Fraction" help=""/>
<param name="pre_mrna_fraction" type="float" value="0.05" min="0" max="1" label="Pre MRNA Fraction" help=""/>
<param name="min_isoform_fraction" type="float" value="0.10" min="0" max="1" label="Min Isoform Fraction" help=""/>
<param name="pre_mrna_fraction" type="float" value="0.15" min="0" max="1" label="Pre MRNA Fraction" help=""/>
<param name="do_normalization" type="select" label="Perform quartile normalization" help="Removes top 25% of genes from FPKM denominator to improve accuracy of differential expression calls for low abundance transcripts.">
<option value="No">No</option>
<option value="Yes">Yes</option>