Daniel Blankenberg 4eb1b0a79f Better determination in tests if a provided input is a DataToolParameter to better handle .gz and .zip uploads and allowing uploads from a sub-directory of test-data/.

2011-02-28 12:16:28 -05:00

..

listFiles.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

plinkbinJZ.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgCaCo_code.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgCaCo.py

added a grey option for manhattan plot chromosome colours

2010-03-26 22:40:46 -04:00

rgCaCo.xml

Add mimetypes to snp/wga datatypes in genetics.py

2010-05-11 11:51:49 -04:00

rgClean_code.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgClean.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgClean.xml

Add mimetypes to snp/wga datatypes in genetics.py

2010-05-11 11:51:49 -04:00

rgEigPCA_code.py

Added ldIndep datatype to genetics.py and datatypes_conf for ld reduced datasets - these are pbed

2010-05-19 10:28:41 -04:00

rgEigPCA.py

Removed redundant code from rgEigPCA.py now that it takes a pre-converted ldindep dataset.

2010-05-20 12:41:51 -04:00

rgEigPCA.xml

Require two paths for rgtest.sh galaxyroot and outroot

2010-05-22 19:47:50 -04:00

rgfakePed_code.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgfakePed.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgfakePed.xml

Two small fixes for WGA/SNP tools needed so they work on test.

2010-04-02 14:23:55 -04:00

rgfakePhe_code.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgfakePhe.py

Adjust image links in tools to work with a proxy prefix [Brad Chapman]. Fixes #141

2010-12-14 14:22:13 -05:00

rgfakePhe.xml

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgGLM_code.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgGLM.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgGLM.xml

Add mimetypes to snp/wga datatypes in genetics.py

2010-05-11 11:51:49 -04:00

rgGRR_code.py

Added ldIndep datatype to genetics.py and datatypes_conf for ld reduced datasets - these are pbed

2010-05-19 10:28:41 -04:00

rgGRR.py

Fixes to some rgenetics tests and test outputs

2010-08-31 02:27:33 -04:00

rgGRR.xml

More tweaks to some snp/wga composite output test comparisons - all png/pdf should be sim_size rather than lines_diff

2010-05-20 12:38:35 -04:00

rgGTOOL_code.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgGTOOL.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgGTOOL.xml

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgHaploView_code.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgHaploView.py

Fixed edge case error handling when no matching rs

2011-01-15 21:06:17 +11:00

rgHaploView.xml

rgHaploView tool version upgrade - now shows thumbnail of ld plots

2010-11-09 12:12:32 -05:00

rgLDIndep_code.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgLDIndep.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgLDIndep.xml

More tweaks to some snp/wga composite output test comparisons - all png/pdf should be sim_size rather than lines_diff

2010-05-20 12:38:35 -04:00

rgManQQ_code.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgManQQ.py

Fix for failing rgManQQ functional test - changed R outputs. cut down size of default png - much faster...

2010-11-07 20:14:45 -05:00

rgManQQ.xml

Adjust image links in tools to work with a proxy prefix [Brad Chapman]. Fixes #141

2010-12-14 14:22:13 -05:00

rgPedSub_code.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgPedSub.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgPedSub.xml

Better determination in tests if a provided input is a DataToolParameter to better handle .gz and .zip uploads and allowing uploads from a sub-directory of test-data/.

2011-02-28 12:16:28 -05:00

rgQC_code.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgQC.py

Fix for pdfnup blathering to stdout causing buildbot to barf

2010-08-31 08:25:44 -04:00

rgQC.xml

rgenetics test updates:

2010-09-10 20:34:58 -04:00

rgQQ_code.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgQQ.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgQQ.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

rgRegion_code.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgRegion.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgRegion.xml

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgTDT_code.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgTDT.py

Adding rg test outputs and updated tools

2010-03-26 14:42:15 -04:00

rgTDT.xml

Add mimetypes to snp/wga datatypes in genetics.py

2010-05-11 11:51:49 -04:00

rgtest_one_tool.sh

rg LD tool fixes

2010-09-06 17:00:16 -04:00

rgtest.sh

rg LD tool fixes

2010-09-06 17:00:16 -04:00

rgutils.py

Fixes to some rgenetics tests and test outputs

2010-08-31 02:27:33 -04:00