Daniel Blankenberg b2e2b801ea Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is ...

greater than config.output_size_limit, no data will be retrieved and an error message will be provided to the user.

Tools using this script have been updated to provide the max file size on the command line.

Resolves ticket #93.

2009-08-03 12:02:54 -04:00

..

annotation_profiler

Missed adding chrominfo.py, due to my hardcoded paths in test environ. Should be good now?

2009-04-23 14:42:35 -04:00

data_destination

merging from central

2008-10-28 11:28:15 -04:00

data_source

Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is

2009-08-03 12:02:54 -04:00

emboss_5

Forgot to eliminate the emboss path...

2008-04-25 19:07:26 +00:00

encode

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

extract

Committing changes to 'extract genomic dna' tool - twobit file will be opened only once per job. (Courtesy: Gordon).

2009-07-20 16:57:55 -04:00

fasta_tools

Fixed for functional tests for new version of fasta_filter_by_length tool contributed by James Casbon.

2009-07-23 14:31:11 -04:00

fastx_toolkit

Integration of Assaf Gordon's Solexa toolkit into Galaxy - (all tools except 3 are working fine).

2009-02-20 14:17:46 -05:00

filters

A tiny bug fix for Sort tool - the delimiter is now defaulted to tab.

2009-06-25 15:34:05 -04:00

hyphy

Fixes to get functional tests working.

2009-02-03 18:34:27 -05:00

maf

Accidently commited a testing change, removed

2009-04-29 14:47:18 -04:00

metag_tools

Replacing \"qual\" datatype with 3 new datatypes: qualsolid, qual454 and qualsolexa.

2009-04-29 11:53:22 -04:00

new_operations

- Performance of indexers much improved.

2009-04-23 13:46:52 -04:00

next_gen_conversion

Added solid_to_fastq and fastq_conversions converters to Convert Formats section

2009-07-31 11:48:37 -04:00

plotting

Bug fixes for histogram liftover and grouping tools.

2009-05-29 11:07:18 -04:00

regVariation

A tiny bug fix for linear regression tool.

2009-04-30 11:07:34 -04:00

solid_tools

MAQ mapping pipeline for SOLiD data

2009-05-13 21:54:45 -04:00

sr_mapping

Added fastqsanger data format and required bwa_wrapper to take only that format as input

2009-07-30 12:06:24 -04:00

stats

Bug fixes for histogram liftover and grouping tools.

2009-05-29 11:07:18 -04:00

taxonomy

Fixed finf_diag_hits plus a ttypo correction

2009-04-21 09:36:42 -04:00

validation

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

visualization

Using deprecated sha module in place of hashlib to keep compatibility with python2.4

2009-02-05 15:34:31 -05:00