Daniel Blankenberg 3dbcdacfab Fix for aggregate_scores_in_intervals.py broken in 95bf71620d50c6d81248eef2001a7dc156ae1088.

2014-01-27 09:54:34 -05:00

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aggregate_binned_scores_in_intervals.xml

Remove unspecified build validator from aggregate_scores_in_intervals2 tool because it can work with a custom fasta.

2011-08-24 14:38:29 -04:00

aggregate_scores_in_intervals.py

Fix for aggregate_scores_in_intervals.py broken in 95bf71620d50c6d81248eef2001a7dc156ae1088.

2014-01-27 09:54:34 -05:00

column_maker.py

Import clean up and documentation for compute tool.

2013-03-18 10:09:43 -04:00

column_maker.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

cor.py

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cor.xml

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

correlation.pl

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correlation.xml

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count_gff_features.py

Add count GFF features tool and tests. Tool counts the number of features in a GFF file; this is different than the number of lines b/c GFF features are often multiline.

2011-03-21 13:01:24 -04:00

count_gff_features.xml

Add count GFF features tool and tests. Tool counts the number of features in a GFF file; this is different than the number of lines b/c GFF features are often multiline.

2011-03-21 13:01:24 -04:00

dna_filtering.py

White-list expressions executed by filtering and dna_filtering tools.

2013-11-04 14:55:00 -05:00

dna_filtering.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

filtering.py

Merge Pull Request #244.

2013-11-04 23:42:06 -06:00

filtering.xml

Add parameter to filtering tool to optionally skip header lines. Add test for new parameter usage as well.

2013-01-29 10:37:16 -05:00

generate_matrix_for_pca_lda.pl

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generate_matrix_for_pca_lda.xml

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

grouping.py

Grouping tool: make error clearer when a line doesn't have entry on grouped column

2011-10-04 23:11:23 -04:00

grouping.xml

Improve docs for Grouping tool. Closes #576

2011-06-06 15:30:02 -04:00

gsummary.py

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gsummary.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

gsummary.xml.groups

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lda_analy.xml

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mine_wrapper.py

Add Maximal Information-based Nonparametric Exploration (MINE) tool.

2011-12-16 12:54:21 -05:00

MINE.xml

Add Maximal Information-based Nonparametric Exploration (MINE) tool.

2011-12-16 12:54:21 -05:00

plot_from_lda.xml

Update help and description for Draw ROC plot tool. Questions and comments should be directed to Chungoo Park.

2011-04-15 13:55:45 -04:00

r_wrapper.sh

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wiggle_to_simple.py

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wiggle_to_simple.xml

Backed out changeset 9532e80796ec

2013-11-07 13:02:22 -05:00