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Update help and description for Draw ROC plot tool. Questions and comments should be directed to Chungoo Park.

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Daniel Blankenberg
2011-04-15 13:55:45 -04:00
parent 4b636226b9
commit 4bb2ac729b
2 changed files with 21 additions and 4 deletions
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tool_conf.xml.main
+4 -1
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@@ -128,7 +128,10 @@
<section name="Statistics" id="stats">
<tool file="stats/gsummary.xml" />
<tool file="filters/uniq.xml" />
<tool file="stats/cor.xml" />
<tool file="stats/cor.xml" />
<tool file="stats/generate_matrix_for_pca_lda.xml" />
<tool file="stats/lda_analy.xml" />
<tool file="stats/plot_from_lda.xml" />
</section>
<section name="Graph/Display Data" id="plots">
<tool file="plotting/histogram2.xml" />
tools/stats/plot_from_lda.xml
+17 -3
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@@ -1,9 +1,9 @@
<tool id="plot_for_lda_output1" name="Draw ROC" version="1.0.1">
<description>Receiver Operating Characteristic plot</description>
<tool id="plot_for_lda_output1" name="Draw ROC plot" version="1.0.1">
<description>on "Perform LDA" output</description>
<command interpreter="sh">r_wrapper.sh $script_file</command>
<inputs>
<param format="text" name="input" type="data" label="Source file"> </param>
<param format="txt" name="input" type="data" label="Source file"> </param>
<param name="my_title" size="30" type="text" value="My Figure" label="Title of your plot" help="See syntax below"> </param>
<param name="X_axis" size="30" type="text" value="Text for X axis" label="Legend of X axis in your plot" help="See syntax below"> </param>
<param name="Y_axis" size="30" type="text" value="Text for Y axis" label="Legend of Y axis in your plot" help="See syntax below"> </param>
@@ -235,7 +235,21 @@
<help>
.. class:: infomark
**What it does**
This tool generates a Receiver Operating Characteristic (ROC) plot that shows LDA classification success rates for different values of the tuning parameter tau as Figure 3 in Carrel et al., 2006 (PMID: 17009873).
*Carrel L, Park C, Tyekucheva S, Dunn J, Chiaromonte F, et al. (2006) Genomic Environment Predicts Expression Patterns on the Human Inactive X Chromosome. PLoS Genet 2(9): e151. doi:10.1371/journal.pgen.0020151*
-----
.. class:: warningmark
**Note**
- Output from "Perform LDA" tool is used as input file for this tool.
</help>