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Remove unspecified build validator from aggregate_scores_in_intervals2 tool because it can work with a custom fasta.

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Nate Coraor
2011-08-24 14:38:29 -04:00
parent 068ef1df40
commit 3cbde2e760
1 changed files with 2 additions and 6 deletions
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tools/stats/aggregate_binned_scores_in_intervals.xml
+2 -6
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@@ -1,4 +1,4 @@
<tool id="aggregate_scores_in_intervals2" description="such as phastCons, GERP, binCons, and others for a set of genomic intervals" name="Aggregate datapoints" version="1.1.2">
<tool id="aggregate_scores_in_intervals2" description="such as phastCons, GERP, binCons, and others for a set of genomic intervals" name="Aggregate datapoints" version="1.1.3">
<description>Appends the average, min, max of datapoints per interval</description>
<command interpreter="python">
#if $score_source_type.score_source == "user" #aggregate_scores_in_intervals.py $score_source_type.input2 $input1 ${input1.metadata.chromCol} ${input1.metadata.startCol} ${input1.metadata.endCol} $out_file1 --chrom_buffer=3
@@ -6,11 +6,7 @@
#end if#
</command>
<inputs>
<param format="interval" name="input1" type="data" label="Interval file">
<validator type="unspecified_build" message="Unspecified build, this tool works with data from genome builds hg16, hg17 or hg18. Click the pencil icon in your history item to set the genome build."/>
<validator type="dataset_metadata_in_file" filename="binned_scores.loc" metadata_name="dbkey" metadata_column="0" message="Data is currently not available for the specified build." />
</param>
<param format="interval" name="input1" type="data" label="Interval file"/>
<conditional name="score_source_type">
<param name="score_source" type="select" label="Score Source">
<option value="cached" selected="true">Locally Cached Scores</option>