Without this fix, the Cheetah expression:
$dataset.is_of_type('unknown_ext')
in a tool command would be equivalent to:
$dataset.is_of_type('txt')
meaning that if the dataset datatype is a subclass of Text, the expression
would evaluate to True without any warning.
xref. https://github.com/galaxyproject/tools-iuc/issues/1373
Also add missing `xml` datatype to
`test/functional/tools/sample_datatypes_conf.xml` which is needed by 3 test
tools.
This directory contains tools only useful for testing and
demonstrating aspects of the tool syntax. Run the test driver script
'run_tests.sh' with the '-framework' as first argument to run through
these tests. Pass in an '-id' along with one of these tool ids to test
a single tool.
Some API tests use these tools to test various features of the API,
tool, and workflow subsystems. Pass the argument
'-with_framework_test_tools' to 'run_tests.sh' in addition to '-api'
to ensure these tools get loaded during the testing process.
Finally, to play around with these tools interactively - simply
replace the 'galaxy.ini' option 'tool_config_file' with:
tool_config_file = test/functional/tools/samples_tool_conf.xml
Nicola Soranzo
0bfa1df72f