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XSD discovered tool problems.

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This commit is contained in:
John Chilton
2016-09-08 11:40:01 -04:00
parent 2d36ab52de
commit d06e2a672b
12 changed files with 13 additions and 13 deletions
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test/functional/tools/column_multi_param.xml
+1 -1
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@@ -9,7 +9,7 @@
<param name="col" type="data_column" data_ref="input1" label="Column to Use" />
</inputs>
<outputs>
<data name="output1" type="tabular" from_work_dir="col_output" />
<data name="output1" format="tabular" from_work_dir="col_output" />
</outputs>
<tests>
<test>
test/functional/tools/column_param.xml
+1 -1
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@@ -7,7 +7,7 @@
<param name="col" type="data_column" data_ref="input1" label="Column to Use" />
</inputs>
<outputs>
<data name="output1" type="tabular" from_work_dir="col_output" />
<data name="output1" format="tabular" from_work_dir="col_output" />
</outputs>
<tests>
<test>
test/functional/tools/identifier_collection.xml
+1 -1
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@@ -8,7 +8,7 @@
<param type="data_collection" collection_type="list" name="input1" label="Input 1" />
</inputs>
<outputs>
<data name="output1" type="tabular" from_work_dir="output1" />
<data name="output1" format="tabular" from_work_dir="output1" />
</outputs>
<tests>
</tests>
test/functional/tools/identifier_multiple.xml
+1 -1
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@@ -8,7 +8,7 @@
<param type="data" name="input1" label="Input 1" multiple="true" />
</inputs>
<outputs>
<data name="output1" type="tabular" from_work_dir="output1" />
<data name="output1" format="tabular" from_work_dir="output1" />
</outputs>
<tests>
</tests>
test/functional/tools/identifier_single.xml
+1 -1
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@@ -6,7 +6,7 @@
<param type="data" name="input1" label="Input 1" />
</inputs>
<outputs>
<data name="output1" type="tabular" from_work_dir="output1" />
<data name="output1" format="tabular" from_work_dir="output1" />
</outputs>
<tests>
</tests>
test/functional/tools/inputs_as_json.xml
+1 -1
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@@ -75,7 +75,7 @@ with open("output", "w") as f:
<param name="more_text" type="text" value="sdefault" />
</when>
</conditional>
<section name="section_example">
<section name="section_example" title="Section Example">
<param name="section_text" type="text" value="section_default" />
</section>
</inputs>
test/functional/tools/multi_output.xml
+1 -1
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@@ -1,4 +1,4 @@
<tool id="multi_output" name="Multi_Output" description="multi_output" force_history_refresh="True" version="0.1.0">
<tool id="multi_output" name="Multi_Output" version="0.1.0">
<command>
echo "Hello" > $report;
echo "World Contents" > '${__new_file_path__}/primary_${report.id}_world_visible_?'
test/functional/tools/multi_output_assign_primary.xml
+1 -1
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@@ -1,4 +1,4 @@
<tool id="multi_output_assign_primary" name="multi_output_assign_primary" description="multi_output_assign_primary" version="0.1.0">
<tool id="multi_output_assign_primary" name="multi_output_assign_primary" version="0.1.0">
<command>
echo "1" > sample1.report.tsv;
echo "2" > sample2.report.tsv;
test/functional/tools/multi_output_configured.xml
+1 -1
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@@ -1,4 +1,4 @@
<tool id="multi_output_configured" name="Multi_Output_Configured" description="multi_output_configured" version="0.1.0">
<tool id="multi_output_configured" name="Multi_Output_Configured" version="0.1.0">
<command>
echo "Hello" > $report;
mkdir subdir1;
test/functional/tools/tool_directory.xml
+1 -1
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@@ -6,7 +6,7 @@
<param type="integer" name="ignored" label="Ignored" value="0" />
</inputs>
<outputs>
<data name="output1" type="xml" from_work_dir="output1" />
<data name="output1" format="xml" from_work_dir="output1" />
</outputs>
<tests>
<test>
test/functional/tools/validation_repeat.xml
+2 -2
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@@ -8,10 +8,10 @@
#end for
</command>
<inputs>
<repeat name="r1" label="Repeat 1">
<repeat name="r1" title="Repeat 1">
<param name="text" type="text" label="text input" />
</repeat>
<repeat name="r2" label="Repeat 2">
<repeat name="r2" title="Repeat 2">
<param name="text" type="text" label="text input">
<validator type="empty_field" />
<sanitizer>
tools/data_source/upload.xml
+1 -1
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@@ -53,7 +53,7 @@
<param name="NAME" type="hidden" help="Name for dataset in upload"></param>
</upload_dataset>
<param name="dbkey" type="genomebuild" label="Genome" />
<conditional name="files_metadata" title="Specify metadata" value_from="self:app.datatypes_registry.get_upload_metadata_params" value_ref="file_type" value_ref_in_group="False" />
<conditional name="files_metadata" value_from="self:app.datatypes_registry.get_upload_metadata_params" value_ref="file_type" value_ref_in_group="False" />
<!-- <param name="other_dbkey" type="text" label="Or user-defined Genome" /> -->
</inputs>
<help>