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Ross Lazarus
142c1c53c3
rgHaploView.xml
path to haploview.jar in ${GALAXY_DATA_LIBRARY_FOLDER}/shared/jars
no need to separate rs with X in test
rgHaploView.py
fixes to map generation depending on whether a region or a list of rs has been supplied
repairs to tests and test output (re) generators
Regenerated all test output files since now changed slightly.
For the record, this was done as follows
using the supplied rgenetics utility test harness shell script
Be warned that rgtest.sh will recreate test outputs for all tools
# use rgtest_one_tool.sh
# 3 parameters: toolID, testsrc galaxy root, testout galaxy root
# first, test the tool to a neutral output directory
sudo sh tools/rgenetics/rgtest_one_tool.sh rgHaploView /opt/galaxy /tmp
# check contents
diff -r /opt/galaxy/test-data/rgtestouts/rgHaploView/* /tmp/test-data/rgtestouts/rgHaploView/*
# do it for real
sudo sh tools/rgenetics/rgtest_one_tool.sh rgHaploView /opt/galaxy /opt/galaxy