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Fix for tools/filters/wig_to_bigwig.xml when coordinates extend beyond chromosome boundaries and -clip was specified.

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Daniel Blankenberg
2010-09-01 19:26:25 -04:00
parent 4ea8dd779b
commit ebf8923704
1 changed files with 1 additions and 1 deletions
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tools/filters/wig_to_bigwig.xml
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@@ -1,6 +1,6 @@
<tool id="wig_to_bigWig" name="Wig to bigWig" version="1.0.0">
<description>converter</description>
<command>grep -v "^track" $input1 | wigToBigWig stdin $chromInfo $out_file1 -blockSize=$blockSize -itemsPerSlot=$itemsPerSlot $clip $unc</command>
<command>grep -v "^track" $input1 | wigToBigWig stdin $chromInfo $out_file1 -blockSize=$blockSize -itemsPerSlot=$itemsPerSlot $clip $unc 2&gt;&amp;1 || echo "Error running wigToBigWig." >&amp;2</command>
<requirements>
<requirement type="binary">wigToBigWig</requirement>
</requirements>