Kelly Vincent 5e1ad9dc3b Fixed another bug in column join so it will handle filling empty columns properly

2010-08-20 17:04:16 -04:00

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basecoverage.xml

Wiki links now point to bitbucket instead of trac

2010-01-19 18:15:27 -05:00

cluster.xml

Wiki links now point to bitbucket instead of trac

2010-01-19 18:15:27 -05:00

column_join.py

Fixed another bug in column join so it will handle filling empty columns properly

2010-08-20 17:04:16 -04:00

column_join.xml

Updated column join to handle situation when last column is a join column and a row is missing that column

2010-08-20 14:40:39 -04:00

complement.xml

Wiki links now point to bitbucket instead of trac

2010-01-19 18:15:27 -05:00

concat.xml

Enhance functional test framework so that a boolean form field ( checkbox ) can have a false value ( be unchecked ). Add a 2nd test to gops_concat that uses this behavior.

2010-02-17 11:07:08 -05:00

coverage.xml

Wiki links now point to bitbucket instead of trac

2010-01-19 18:15:27 -05:00

flanking_features.py

Enhance 'Fetch Closest Features' tool to use GFF files and added tests for new functionality.

2010-08-18 14:19:33 -04:00

flanking_features.xml

Enhance 'Fetch Closest Features' tool to use GFF files and added tests for new functionality.

2010-08-18 14:19:33 -04:00

get_flanks.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

get_flanks.xml

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

gops_basecoverage.py

Modified strand column assignment to the NiceReaderWrapper object in basecoverage tool. Previously, if the input had no strand column declared, the object would have a default strand col of 5, and return a coverage of 0 as c5 might not have been a valid strand col.

2010-02-10 14:14:55 -05:00

gops_cluster.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_complement.py

Move ucsc and gbrowse data from static to tool-data/shared.

2008-06-03 18:53:26 +00:00

gops_concat.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_coverage.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_intersect.py

Update gops_intersect and gops_subtract documentation to reflect that tools can accept both BED and GFF files.

2010-08-04 14:04:37 -04:00

gops_join.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_merge.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_subtract.py

Update gops_intersect and gops_subtract documentation to reflect that tools can accept both BED and GFF files.

2010-08-04 14:04:37 -04:00

intersect.xml

Improvements to GOPS intersect: (a) preserve metadata for interval inputs; (b) allow arbitrary mix of interval and GFF inputs; and (c) functional tests updated to test new functionality.

2010-06-23 11:16:58 -04:00

join.xml

Wiki links now point to bitbucket instead of trac

2010-01-19 18:15:27 -05:00

merge.xml

Wiki links now point to bitbucket instead of trac

2010-01-19 18:15:27 -05:00

operation_filter.py

Improvements to GOPS subtract: (a) preserve metadata for interval inputs; (b) allow arbitrary mix of interval and GFF inputs; and (c) functional tests updated to test new functionality.

2010-06-23 10:43:17 -04:00

subtract_query.py

Deprecated code corrections for supporting Python 2.6. Many of the Python 2.6 eggs are still throwing DeprecationWarning messages, so some things still won't work. Eggs for 2.6 need to be re-scrambled after corrections are made.

2009-08-14 15:37:31 -04:00

subtract_query.xml

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

subtract.xml

Improvements to GOPS intersect: (a) preserve metadata for interval inputs; (b) allow arbitrary mix of interval and GFF inputs; and (c) functional tests updated to test new functionality.

2010-06-23 11:16:58 -04:00

tables_arithmetic_operations.pl

Adding new regional variation tools developed by Zaky from Makova lab.

2010-04-27 15:36:55 -04:00

tables_arithmetic_operations.xml

Adding new regional variation tools developed by Zaky from Makova lab.

2010-04-27 15:36:55 -04:00