John Davis 3e9e1ab6f9 Merge branch 'release_26.0' into release_26.1 ...

# Conflicts:
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#	lib/galaxy/version/__init__.py
#	package.json
#	packages/app/HISTORY.rst
#	packages/app/setup.cfg
#	packages/auth/HISTORY.rst
#	packages/auth/setup.cfg
#	packages/config/HISTORY.rst
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#	packages/data/HISTORY.rst
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#	packages/files/HISTORY.rst
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#	packages/job_execution/HISTORY.rst
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#	packages/job_metrics/setup.cfg
#	packages/meta/HISTORY.rst
#	packages/meta/setup.cfg
#	packages/navigation/HISTORY.rst
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#	packages/test_selenium/HISTORY.rst
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2026-06-04 23:25:03 -04:00

..

__init__.py

Update lib/galaxy_test/workflow/__init__.py

2024-07-29 11:11:32 -04:00

collection_semantics_cat_collection.gxwf-tests.yml

Add sample_sheet workflow runtime framework tests

2026-03-17 15:15:28 -04:00

collection_semantics_cat_collection.gxwf.yml

Add workflow runtime API tests for collection semantics with mapping fix

2026-03-17 15:15:28 -04:00

collection_semantics_cat_sample_sheet.gxwf-tests.yml

Add sample_sheet workflow runtime framework tests

2026-03-17 15:15:28 -04:00

collection_semantics_cat_sample_sheet.gxwf.yml

Add sample_sheet workflow runtime framework tests

2026-03-17 15:15:28 -04:00

collection_semantics_cat_two_inputs.gxwf-tests.yml

Add workflow runtime API tests for collection semantics with mapping fix

2026-03-17 15:15:28 -04:00

collection_semantics_cat_two_inputs.gxwf.yml

Add workflow runtime API tests for collection semantics with mapping fix

2026-03-17 15:15:28 -04:00

collection_semantics_cat.gxwf-tests.yml

Discriminate TestOutputAssertions union on class key

2026-04-22 09:53:59 -04:00

collection_semantics_cat.gxwf.yml

Add workflow runtime API tests for collection semantics with mapping fix

2026-03-17 15:15:28 -04:00

collection_semantics_list_paired_or_unpaired.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

collection_semantics_list_paired_or_unpaired.gxwf.yml

Add workflow runtime API tests for collection semantics with mapping fix

2026-03-17 15:15:28 -04:00

collection_semantics_list_paired.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

collection_semantics_list_paired.gxwf.yml

Add sample_sheet workflow runtime framework tests

2026-03-17 15:15:28 -04:00

collection_semantics_multi_data_optional.gxwf-tests.yml

Add workflow runtime API tests for collection semantics with mapping fix

2026-03-17 15:15:28 -04:00

collection_semantics_multi_data_optional.gxwf.yml

Add workflow runtime API tests for collection semantics with mapping fix

2026-03-17 15:15:28 -04:00

collection_semantics_paired_or_unpaired.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

collection_semantics_paired_or_unpaired.gxwf.yml

Add workflow runtime API tests for collection semantics with mapping fix

2026-03-17 15:15:28 -04:00

conftest.py

Setup workflow test framework.

2024-07-29 09:19:09 -04:00

default_values_optional.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

default_values_optional.gxwf.yml

Add test for default value with optional input

2024-11-29 16:43:02 +01:00

default_values.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

default_values.gxwf.yml

Fix and add test for required workflow parameters with a default value

2024-11-29 16:43:01 +01:00

directory_index.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

directory_index.gxwf.yml

Fix directory uploads, use `__FETCH_DATA__` api

2025-02-25 18:10:10 +01:00

empty_collection_sort.gxwf-tests.yml

Converge framework workflow test syntax toward Planemo class: syntax

2026-03-02 11:30:24 +01:00

empty_collection_sort.gxwf.yml

Move empty sort workflow test into workflow test framework.

2024-07-29 09:19:09 -04:00

filter_null.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

filter_null.gxwf.yml

Test filter null tool in workflow

2024-10-02 20:05:39 +02:00

flat_over_paired_or_unpaired.gxwf-tests.yml

Fix workflow implicit mapping of flat collections over paired_or_unpaired

2026-02-26 09:54:15 +01:00

flat_over_paired_or_unpaired.gxwf.yml

Fix workflow implicit mapping of flat collections over paired_or_unpaired

2026-02-26 09:54:15 +01:00

flatten_collection_over_execution.gxwf-tests.yml

Converge framework workflow test syntax toward Planemo class: syntax

2026-03-02 11:30:24 +01:00

flatten_collection_over_execution.gxwf.yml

Migrate another collection flatten workflow test to workflow test framework.

2024-07-29 09:19:10 -04:00

flatten_collection.gxwf-tests.yml

Improvements to test format.

2024-09-25 11:35:20 -04:00

flatten_collection.gxwf.yml

Migrate workflow flatten test to workflow test framework.

2024-07-29 09:19:10 -04:00

harmonize_optional_collection.gxwf-tests.yml

Add optional dataset collection mode to harmonize tool

2026-03-31 15:08:01 +02:00

harmonize_optional_collection.gxwf.yml

Add optional dataset collection mode to harmonize tool

2026-03-31 15:08:01 +02:00

inline_user_defined_tool.gxwf-tests.yml

framework workflow tests: add inline user-defined tool case

2026-05-23 07:51:24 -04:00

inline_user_defined_tool.gxwf.yml

framework workflow tests: add inline user-defined tool case

2026-05-23 07:51:24 -04:00

integer_into_data_column.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

integer_into_data_column.gxwf.yml

Allow connecting integer param into data column parameter

2024-08-09 19:41:14 +02:00

map_over_expression.gxwf-tests.yml

Converge framework workflow test syntax toward Planemo class: syntax

2026-03-02 11:30:24 +01:00

map_over_expression.gxwf.yml

Update test workflows to respect gxformat2 0.26.0 syntax (part 2)

2026-05-06 19:08:36 +01:00

multi_select_mapping.gxwf-tests.yml

Converge framework workflow test syntax toward Planemo class: syntax

2026-03-02 11:30:24 +01:00

multi_select_mapping.gxwf.yml

Test to verify/document behavior of mapping over multi-selects.

2024-07-29 09:19:09 -04:00

multiple_integer_into_data_column.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

multiple_integer_into_data_column.gxwf.yml

Add workflow tests for multiple="true" workflow parameter

2024-08-19 17:06:45 +02:00

multiple_text.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

multiple_text.gxwf.yml

Add workflow tests for multiple="true" workflow parameter

2024-08-19 17:06:45 +02:00

multiple_versions.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

multiple_versions.gxwf.yml

Rework and improve workflow tests for tools with different versions.

2024-07-29 09:19:09 -04:00

optional_conditional_inputs_to_build_list.gxwf-tests.yml

Converge framework workflow test syntax toward Planemo class: syntax

2026-03-02 11:30:24 +01:00

optional_conditional_inputs_to_build_list.gxwf.yml

Fix optional unspecified input to conditional step

2025-07-11 15:59:36 +02:00

optional_param_default_value.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

optional_param_default_value.gxwf.yml

Update test workflows to respect gxformat2 0.26.0 syntax (part 2)

2026-05-06 19:08:36 +01:00

optional_param_into_conditional.gxwf-tests.yml

Fix ConnectedValue leak for omitted optional inputs inside groups

2026-06-03 23:19:24 +02:00

optional_param_into_conditional.gxwf.yml

Fix ConnectedValue leak for omitted optional inputs inside groups

2026-06-03 23:19:24 +02:00

optional_text_param_rescheduling.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

optional_text_param_rescheduling.gxwf.yml

Add test case for optional unspecified text parameter

2024-12-18 10:54:16 +01:00

optional_text_to_bool.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

optional_text_to_bool.gxwf.yml

Fix NoReplacement handling in workflow callback_helper

2026-03-06 17:23:32 +01:00

output_parameter.gxwf-tests.yml

Converge framework workflow test syntax toward Planemo class: syntax

2026-03-02 11:30:24 +01:00

output_parameter.gxwf.yml

Workflow test with literal test outputs.

2024-09-24 14:00:08 -04:00

pick_value_add_tag.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

pick_value_add_tag.gxwf.yml

Add post job action support to PickValueModule

2026-03-22 19:15:04 -04:00

pick_value_all_non_null_mapped.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

pick_value_all_non_null_mapped.gxwf.yml

Add implicit collection mapping support to PickValueModule

2026-03-22 19:15:04 -04:00

pick_value_all_non_null_pja.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

pick_value_all_non_null_pja.gxwf.yml

Add all_non_null PJA test + harden _to_pja type checking

2026-03-22 19:15:04 -04:00

pick_value_change_datatype.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

pick_value_change_datatype.gxwf.yml

Add post job action support to PickValueModule

2026-03-22 19:15:04 -04:00

pick_value_first_non_null_mapped.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

pick_value_first_non_null_mapped.gxwf.yml

Add implicit collection mapping support to PickValueModule

2026-03-22 19:15:04 -04:00

pick_value_multi_pja.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

pick_value_multi_pja.gxwf.yml

Add post job action support to PickValueModule

2026-03-22 19:15:04 -04:00

pick_value_rename.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

pick_value_rename.gxwf.yml

Add post job action support to PickValueModule

2026-03-22 19:15:04 -04:00

pick_value_skip_pja.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

pick_value_skip_pja.gxwf.yml

Fix PJAs corrupting skipped pick_value outputs

2026-03-22 19:15:04 -04:00

py.typed

convert galaxy_test to a pure namespace package

2026-04-15 15:27:31 +02:00

rename_based_on_input_collection.gxwf-tests.yml

Converge framework workflow test syntax toward Planemo class: syntax

2026-03-02 11:30:24 +01:00

rename_based_on_input_collection.gxwf.yml

Update test workflows to respect gxformat2 0.26.0 syntax (part 2)

2026-05-06 19:08:36 +01:00

replacement_parameters_legacy.gxwf-tests.yml

Improvements to test format.

2024-09-25 11:35:20 -04:00

replacement_parameters_legacy.gxwf.yml

Update test workflows to respect gxformat2 0.26.0 syntax (part 2)

2026-05-06 19:08:36 +01:00

replacement_parameters_nested.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

replacement_parameters_nested.gxwf.yml

Update test workflows to respect gxformat2 0.26.0 syntax (part 2)

2026-05-06 19:08:36 +01:00

replacement_parameters_text.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

replacement_parameters_text.gxwf.yml

Update test workflows to respect gxformat2 0.26.0 syntax (part 2)

2026-05-06 19:08:36 +01:00

split_paired_and_unpaired.gxwf-tests.yml

Test and lint fixes.

2026-04-22 11:33:06 -04:00

split_paired_and_unpaired.gxwf.yml

Add workflow test for SplitPairedAndUnpairedTool

2026-04-07 17:34:21 +02:00

subcollection_rank_sorting_paired.gxwf-tests.yml

Discriminate TestOutputAssertions union on class key

2026-04-22 09:53:59 -04:00

subcollection_rank_sorting_paired.gxwf.yml

More workflow mapping test cases.

2025-05-03 10:21:17 -04:00

subcollection_rank_sorting.gxwf-tests.yml

Discriminate TestOutputAssertions union on class key

2026-04-22 09:53:59 -04:00

subcollection_rank_sorting.gxwf.yml

Test case for bug where workflow collection mapping interprets collection at wrong rank.

2025-05-03 10:21:17 -04:00

test_framework_workflows.py

framework workflows: grant USER_TOOL_EXECUTE in setUp

2026-05-23 08:32:44 -04:00

triply_nested_list_mapping.gxwf-tests.yml

Migrate gxwf-tests fixtures to CWL-style, add cwl_style dispatch

2026-04-22 09:53:59 -04:00

triply_nested_list_mapping.gxwf.yml

More workflow mapping test cases.

2025-05-03 10:21:17 -04:00

zip_collection.gxwf-tests.yml

Converge framework workflow test syntax toward Planemo class: syntax

2026-03-02 11:30:24 +01:00

zip_collection.gxwf.yml

Move zip collection workflow test into workflow framework tests

2024-07-29 09:19:10 -04:00