Update test workflows to respect gxformat2 0.26.0 syntax (part 2)

This commit is contained in:
Nicola Soranzo
2026-05-06 19:08:36 +01:00
parent a7ab245444
commit cd4c2353bb
8 changed files with 12 additions and 15 deletions
@@ -646,7 +646,7 @@ steps:
inputs: []
steps:
- tool_id: multiple_versions
tool_version: 0.1
tool_version: "0.1"
label: multiple_versions
state:
foo: bar
@@ -780,7 +780,7 @@ inputs: []
steps:
- tool_id: create_2
label: create_2
outputs:
out:
out_file1:
change_datatype: bam
- tool_id: metadata_bam
@@ -807,7 +807,7 @@ steps:
steps:
- tool_id: create_2
label: create_2
outputs:
out:
out_file1:
change_datatype: bam
outputs:
@@ -906,7 +906,7 @@ inputs:
collection_type: "list"
steps:
- tool_id: multiple_versions
tool_version: 0.1
tool_version: "0.1"
label: multiple_versions
state:
foo: bar
@@ -13,6 +13,3 @@ steps:
tool_id: validation_default
in:
input1: param_out/text_param
outputs:
out_file1:
rename: "replaced_param_collection"
@@ -19,6 +19,6 @@ steps:
in:
input1:
source: required_input
outputs:
out:
out_file1:
rename: "prefix_${optional_text}_suffix"
@@ -15,6 +15,6 @@ steps:
$link: fastq_inputs
reference:
$link: fasta_input
outputs:
out:
out_file1:
rename: "#{fastq_input.fastq_input1 | basename} suffix"
@@ -10,7 +10,7 @@ steps:
tool_id: create_2
state:
sleep_time: 0
outputs:
out:
out_file1:
rename: "${replaceme} name"
out_file2:
@@ -22,7 +22,7 @@ steps:
tool_id: create_2
state:
sleep_time: 0
outputs:
out:
out_file1:
rename: "${replacemeinner} name"
out_file2:
@@ -11,7 +11,7 @@ steps:
tool_id: create_2
state:
sleep_time: 0
outputs:
out:
out_file1:
rename: "${replaceme} name"
out_file2:
@@ -444,7 +444,7 @@ steps:
tool_id: cat
in:
input1: test_input
outputs:
out:
out_file1:
rename: "${pja_only_param} name"
""")
@@ -465,7 +465,7 @@ steps:
tool_id: cat
in:
input1: test_input
outputs:
out:
out_file1:
rename: "${pja_only_param} name"
""")
@@ -489,7 +489,7 @@ steps:
tool_id: cat
in:
input1: test_input
outputs:
out:
out_file1:
rename: "${pja_only_param} name"
""")