Nate Coraor 56032de2bd Upgrade to Cheetah 2.2.2

2009-11-10 13:47:34 -05:00

..

blat_coverage_report.py

Some cleanup for short read tools, more coming shortly.

2008-04-14 20:03:38 +00:00

blat_coverage_report.xml

update rmap and rmapq tool wrappers.

2008-04-22 21:04:24 +00:00

blat_mapping.py

Some cleanup for short read tools, more coming shortly.

2008-04-14 20:03:38 +00:00

blat_mapping.xml

update rmap and rmapq tool wrappers.

2008-04-22 21:04:24 +00:00

blat_wrapper.py

Reverting extract_genomic_dna and blat_wrapper tools to rev 1472.

2008-08-21 08:54:51 -04:00

blat_wrapper.xml

Upgrade to Cheetah 2.2.2

2009-11-10 13:47:34 -05:00

convert_SOLiD_color2nuc.py

clean up short read codes.

2008-04-07 14:29:37 +00:00

convert_SOLiD_color2nuc.xml

typo fixes for tools in folders A-M

2009-09-27 23:11:43 -04:00

fastqsolexa_to_fasta_qual.py

Cleanup for fastqsolexa data type converters. We are currently supporting only the Solexa variant and will add support for other variants when the formats stabilize.

2008-06-09 20:15:04 +00:00

fastqsolexa_to_fasta_qual.xml

Replacing \"qual\" datatype with 3 new datatypes: qualsolid, qual454 and qualsolexa.

2009-04-29 11:53:22 -04:00

mapping_to_ucsc.py

New tool to format short read mapping data as a UCSC custom track,.

2008-09-17 16:42:08 -04:00

mapping_to_ucsc.xml

typo fixes for tools in folders A-M

2009-09-27 23:11:43 -04:00

megablast_wrapper.py

Fixed megablast_wrapper test to use phiX database and modified parameter passing to use named parameters

2009-11-10 13:06:20 -05:00

megablast_wrapper.xml

Fixed megablast_wrapper test to use phiX database and modified parameter passing to use named parameters

2009-11-10 13:06:20 -05:00

megablast_xml_parser.py

megablast fix from Anton

2009-01-05 15:26:17 -05:00

megablast_xml_parser.xml

typo fixes for tools in folders A-M

2009-09-27 23:11:43 -04:00

rmap_wrapper.py

Revert 2715.

2008-06-04 13:02:15 +00:00

rmap_wrapper.xml

Revert 2715.

2008-06-04 13:02:15 +00:00

rmapq_wrapper.py

Revert 2715.

2008-06-04 13:02:15 +00:00

rmapq_wrapper.xml

Replacing \"qual\" datatype with 3 new datatypes: qualsolid, qual454 and qualsolexa.

2009-04-29 11:53:22 -04:00

short_reads_figure_high_quality_length.py

Revert 2715.

2008-06-04 13:02:15 +00:00

short_reads_figure_high_quality_length.xml

typo fixes for tools in folders A-M

2009-09-27 23:11:43 -04:00

short_reads_figure_score.py

fix for short read score distribution tool. restore test data.

2008-12-19 14:25:43 -05:00

short_reads_figure_score.xml

typo fixes for tools in folders A-M

2009-09-27 23:11:43 -04:00

short_reads_trim_seq.py

Revert 2715.

2008-06-04 13:02:15 +00:00

short_reads_trim_seq.xml

typo fixes for tools in folders A-M

2009-09-27 23:11:43 -04:00

shrimp_color_wrapper.py

add shrimp_color_space mapping tool with functional test data.

2008-10-13 15:06:42 -04:00

shrimp_color_wrapper.xml

Upgrade to Cheetah 2.2.2

2009-11-10 13:47:34 -05:00

shrimp_wrapper.py

add error msg for shrimp_wrapper when memory error and zero hits.

2008-09-30 16:40:42 -04:00

shrimp_wrapper.xml

Upgrade to Cheetah 2.2.2

2009-11-10 13:47:34 -05:00

split_paired_reads.py

Fixed a stupid and truly horrible paired end splitter bug

2009-08-20 17:33:39 -04:00

split_paired_reads.xml

Modified test data and tool conf for fastq stats

2009-10-08 14:50:28 -04:00