Also fixes it for backgrounded workflow invocations (fixes#3268 reported by @guerler).
Includes a new test tool w/test definition that exercises this functionality. This tool fails without these changes.
This directory contains tools only useful for testing and
demonstrating aspects of the tool syntax. Run the test driver script
'run_tests.sh' with the '-framework' as first argument to run through
these tests. Pass in an '-id' along with one of these tool ids to test
a single tool.
Some API tests use these tools to test various features of the API,
tool, and workflow subsystems. Pass the argument
'-with_framework_test_tools' to 'run_tests.sh' in addition to '-api'
to ensure these tools get loaded during the testing process.
Finally, to play around with these tools interactively - simply
replace the 'galaxy.ini' option 'tool_config_file' with:
tool_config_file = test/functional/tools/samples_tool_conf.xml
John Chilton
06cc5f5828