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https://github.com/galaxyproject/galaxy.git
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mvdbeek
0085bb2f10
Three review fixes to the populator: - Reload broadcast: send_reload_notification does a bare kombu exchange publish that never declares the active-process queues, so on the kombu sqlalchemy transport (a common default) the shed-install broadcast never reaches peers — their cached index stays stale until restart. Add _broadcast_reload, which routes through send_control_task (correct declare_queues, derived from the worker_process table) when an app is in hand; the app-less CLI keeps the best-effort raw publish. Thread app through populate_store_inline / populate_for_paths / reconcile_index and the shed-install, ad-hoc self-heal, and reset_shed_tools call sites. - Macro watch: a changed macros file left its importing tools with stale expanded content because the watcher filtered "macro" out by filename. Accept every .xml and, on a <macros> root, re-expand the tool siblings in its directory. - Typing: annotate build_index_entry_from_source (ToolSource / stored / discovered) and drop the redundant hasattr guards the ABC already guarantees (parse_uuid stays guarded — it is XML-only). Claude-Session: https://claude.ai/code/session_018L7ZmCv2ubKA3JNeSL8Pkr
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:alt: Galaxy Logo
The latest information about Galaxy can be found on the `Galaxy Community Hub <https://galaxyproject.org/>`__.
Community support is available at `Galaxy Help <https://help.galaxyproject.org/>`__.
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Galaxy Quickstart
=================
Galaxy requires Python 3.10 or higher. To check your Python version, run:
.. code:: console
$ python -V
Python 3.10.12
Start Galaxy:
.. code:: console
$ sh run.sh
Once Galaxy completes startup, you should be able to view Galaxy in your
browser at: http://localhost:8080
For more installation details please see: https://getgalaxy.org/
Documentation is available at: https://docs.galaxyproject.org/
Tutorials on how to use Galaxy, perform scientific analyses with it, develop Galaxy and its tools, and admin a Galaxy server are at: https://training.galaxyproject.org/
Tools
=====
Tools can be either installed from the Tool Shed or added manually.
For details please see the `tutorial <https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/>`__.
Note that not all dependencies for the tools provided in the
``tool_conf.xml.sample`` are included. To install them please visit
"Manage dependencies" in the admin interface.
Issues and Galaxy Development
=============================
Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_ .