Nicola Soranzo
eba3fb4b35
Fix common_startup.sh for galaxy tarballs
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Do not assume git is installed and the `.git` directory is present.
Fix https://github.com/galaxyproject/galaxy/issues/5466
2018-02-08 11:52:24 -05:00
Dannon Baker
f0a8243f7d
Client-format post-merge
2018-02-05 13:06:29 -05:00
Dannon Baker
0704d63d0b
Merge remote-tracking branch 'jmchilton/1801_hdca_delete' into release_18.01
2018-02-05 13:06:01 -05:00
Martin Cech
b28fb7e4d7
change the history icon-btn selector to work with dropdowns
2018-02-04 20:10:36 -05:00
Martin Cech
3512096a14
remove unused classes and aria
2018-02-02 13:53:26 -05:00
Martin Cech
8019afb8b5
fix typo
2018-02-02 13:34:17 -05:00
Martin Cech
55b6d601a8
add empty href to links so the cursor is right
2018-02-02 13:32:56 -05:00
Dannon Baker
a392b5750a
Ensure jobStateSummariesCollection exists; events can fire during deletion actions causing this event to fail
2018-02-02 09:01:35 -05:00
John Chilton
ab3d53c5ce
More options for collection deletion.
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Delete button now a drop down menu (like dropdown for downloading metadata files).
- Top option just deletes the collection.
- Second option deletes the collection and attempts to delete the datasets contained within it.
- The third option deletes the collection and attempts to purge the datasets within it.
2018-02-01 23:20:59 -05:00
Evgeny Anatskiy
9b4465efd3
fix webhook's property name
2018-02-01 12:22:14 -05:00
Dannon Baker
fa0ba22f97
Fix webhook filtering, make it a bit more defensive. Minor other tweaks.
2018-02-01 12:18:02 -05:00
Dannon Baker
22b0b2f2e9
Minor tweaks/fixes while trying to sort out qunit test failures related to webhook changes.
2018-02-01 12:18:02 -05:00
Dannon Baker
3b7daece04
Delay interpolation of webhook url template; Galaxy won't exist as a configured object necessarily when this is imported.
2018-02-01 12:18:02 -05:00
Dannon Baker
57c1fc7804
Client formatting of webhooks changes.
2018-02-01 12:18:02 -05:00
Evgeny Anatskiy
ada76931d8
add weighted random webhook pick
2018-02-01 12:18:01 -05:00
Evgeny Anatskiy
6070bf07e1
simplify Webhooks' structure
2018-02-01 12:18:01 -05:00
Nicola Soranzo
5b23c0e87d
Merge branch 'release_17.09' into release_18.01
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Conflicts:
client/galaxy/scripts/mvc/workflow/workflow-node.js
config/galaxy.ini.sample
static/maps/mvc/workflow/workflow-node.js.map
static/scripts/mvc/workflow/workflow-node.js
2018-01-31 10:38:53 +00:00
mvdbeek
74d57cfc1c
Fix subworkflow creation
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This fixes #5396 . The problem was that we would override the content_id with an
undefined value. Broken in https://github.com/galaxyproject/galaxy/pull/5249 .
2018-01-26 14:22:15 +01:00
Martin Cech
5defdc7919
Merge pull request #5364 from dannon/history_multipanel_fixes
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History multipanel fixes
2018-01-25 10:51:27 -05:00
Martin Cech
091c5042d9
Merge pull request #5337 from dannon/tag_editor_constraint
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Tag editor size constraint
2018-01-24 22:59:53 -05:00
Dannon Baker
541968bbd9
Swap to fat arrow functions, this reference in multipanel behavior handling.
2018-01-23 11:02:21 -05:00
Dannon Baker
4da1dad394
Fix for history multipanel view for when the 'current' history is
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deleted and/or purged. Several bits of refactoring, import cleanup, and
a start towards documenting globals in client files touched.
2018-01-23 10:31:18 -05:00
Dannon Baker
84ae5db0f1
Client formatting
2018-01-22 13:47:20 -05:00
Dannon Baker
0e0303743d
Merge branch 'release_17.09' into dev
2018-01-22 13:46:47 -05:00
Dannon Baker
177aa2e7f9
Merge branch 'release_17.05' into release_17.09
2018-01-22 13:28:42 -05:00
Dannon Baker
7af6381e24
Disable galaxy tour 'path' navigation -- this style of tour nav behaves very poorly with Galaxy and it's pretty easy to get a tour completely *stuck* in reload loops from the user experience, forcing manual cache cleaning or the like to make Galaxy usable again.
2018-01-18 17:12:45 -05:00
Dannon Baker
d51ea5d200
Constrain the select2 container for the tags display, instead of the outer box; this prevents the prompt from (in some cases) taking the space.
2018-01-18 15:35:38 -05:00
Dannon Baker
7434326006
Constrain tag editor height, minor refactoring. Will be removed with the conversion to a vue component that can pop out with a more flexible display.
2018-01-18 15:32:08 -05:00
Martin Cech
bf2c9bab34
Merge pull request #5321 from mvdbeek/rerun_without_dependent_jobs
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Add option to replace failed elements on job rerun
2018-01-17 16:42:37 -05:00
mvdbeek
be4fba3566
Add option to replace failed elements on job rerun
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Replacing failed collection elements was already possible when dependent jobs
were found (https://github.com/galaxyproject/galaxy/pull/5247 ).
This commit restructures the remapping so that remapping is possible when no
dependent jobs are available. This also simplifies the replacement of HDAs
between old and new jobs.
2018-01-17 16:51:24 +01:00
Martin Cech
69e35a2434
allow message to be modified on ldda
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implements #5309
2018-01-15 15:58:51 -05:00
Dannon Baker
9cddf804fa
Run client-format
2018-01-10 11:31:02 -05:00
Dannon Baker
e88706c282
Prettier now supports Vue SFCs
2018-01-10 11:30:41 -05:00
Dannon Baker
823d07d41a
Prettier upgrade to 1.10
2018-01-10 11:30:16 -05:00
Dannon Baker
e2a662eb95
Client format
2018-01-10 10:52:14 -05:00
Dannon Baker
9c743f2b08
Merge remote-tracking branch 'istevenshen/dev' into dev
2018-01-10 10:51:20 -05:00
Dannon Baker
a19596e3ea
Fix dataset-model's edit url
2018-01-10 08:39:30 -05:00
steven
6e84fef4e0
Update locale.js
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Add tool-panel and history-panel title translation.
2018-01-10 16:26:16 +08:00
Martin Cech
11f434af39
Merge pull request #5279 from dannon/dataset-error-cleanup
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Dataset Error Interface Cleanup
2018-01-09 14:01:51 -05:00
Dannon Baker
5f3e11c02c
A few minor tweaks to page rendering on dataset error interface
2018-01-08 17:11:08 -05:00
Dannon Baker
38e725ff66
Template formatting.
2018-01-08 17:01:38 -05:00
Dannon Baker
489f0a84df
Cleanup in dataset-error.js, extra escaping.
2018-01-08 16:56:29 -05:00
Dannon Baker
e694aee7a9
Formatting in webpack config.
2018-01-08 15:21:20 -05:00
Dannon Baker
c71ab1df2d
Fix firefox (worked in Chrome only) sourcemaps in dev mode.
2018-01-08 15:20:20 -05:00
Dannon Baker
ac11236a0a
Client format.
2018-01-08 09:27:23 -05:00
Dannon Baker
6cecafa6f3
Merge remote-tracking branch 'upstream/release_17.09' into dev
2018-01-08 09:21:16 -05:00
guerler
8602ecbfac
Only collect required attributes of linked steps
2018-01-05 11:08:18 -05:00
Martin Cech
bb29444edf
Merge pull request #5128 from dannon/check_for_client_build
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Client build check
2018-01-03 17:11:13 -05:00
mvdbeek
d448001fe6
Also update tool_id when switching versions in workflow editor
2017-12-31 20:18:02 +02:00
mvdbeek
3d45cce423
Fix undefined variable
2017-12-31 18:06:50 +02:00
Nicola Soranzo