mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 13:50:20 +08:00
simplify Webhooks' structure
This commit is contained in:
committed by
Dannon Baker
parent
6b0542f7c2
commit
6070bf07e1
@@ -105,11 +105,11 @@ var Collection = Backbone.Collection.extend({
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//
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// Webhooks
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//
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Webhooks.add({
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url: "api/webhooks/masthead/all",
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callback: function(webhooks) {
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Webhooks.load({
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type: "masthead",
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callback: function (webhooks) {
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$(document).ready(() => {
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$.each(webhooks.models, (index, model) => {
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webhooks.each((model) => {
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var webhook = model.toJSON();
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if (webhook.activate) {
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var obj = {
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@@ -175,13 +175,13 @@ var menu = [
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];
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// Webhooks
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Webhooks.add({
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url: "api/webhooks/history-menu/all",
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async: false, // (hypothetically) slows down the performance
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Webhooks.load({
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type: "history-menu",
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async: false, // (hypothetically) slows down the performance
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callback: function(webhooks) {
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var webhooks_menu = [];
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$.each(webhooks.models, (index, model) => {
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webhooks.each((model) => {
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var webhook = model.toJSON();
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if (webhook.activate) {
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webhooks_menu.push({
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@@ -6,6 +6,7 @@ import Utils from "utils/utils";
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import Deferred from "utils/deferred";
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import Ui from "mvc/ui/ui-misc";
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import FormBase from "mvc/form/form-view";
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import Webhooks from "mvc/webhooks";
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import Citations from "components/Citations.vue";
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import Vue from "vue";
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export default FormBase.extend({
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@@ -200,19 +201,23 @@ export default FormBase.extend({
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}
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// add tool menu webhooks
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$.getJSON("/api/webhooks/tool-menu/all", webhooks => {
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_.each(webhooks, webhook => {
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if (webhook.activate && webhook.config.function) {
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menu_button.addMenu({
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icon: webhook.config.icon,
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title: webhook.config.title,
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onclick: function() {
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var func = new Function("options", webhook.config.function);
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func(options);
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}
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});
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}
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});
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Webhooks.load({
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type: "tool-menu",
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callback: function(webhooks) {
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webhooks.each((model) => {
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var webhook = model.toJSON();
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if (webhook.activate && webhook.config.function) {
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menu_button.addMenu({
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icon: webhook.config.icon,
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title: webhook.config.title,
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onclick: function() {
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var func = new Function("options", webhook.config.function);
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func(options);
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}
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});
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}
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});
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}
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});
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return {
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@@ -598,7 +598,7 @@ var View = Backbone.View.extend({
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if ($.isArray(response) && response.length > 0) {
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self.$el.append($("<div/>", { id: "webhook-view" }));
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var WebhookApp = new Webhooks.WebhookView({
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urlRoot: `${Galaxy.root}api/webhooks/workflow`,
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type: "workflow",
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toolId: job_def.tool_id,
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toolVersion: job_def.tool_version
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});
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@@ -227,7 +227,7 @@ var View = Backbone.View.extend({
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if (response.jobs && response.jobs.length > 0) {
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self.$el.append($("<div/>", { id: "webhook-view" }));
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var WebhookApp = new Webhooks.WebhookView({
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urlRoot: `${Galaxy.root}api/webhooks/tool`,
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type: "tool",
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toolId: job_def.tool_id
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});
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}
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@@ -1,66 +1,58 @@
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/**
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Webhooks
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**/
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import Utils from 'utils/utils';
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var WebhookModel = Backbone.Model.extend({
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defaults: {
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activate: false
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}
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const Webhooks = Backbone.Collection.extend({
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url: `${Galaxy.root}api/webhooks`
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});
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var Webhooks = Backbone.Collection.extend({
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model: WebhookModel
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});
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const WebhookView = Backbone.View.extend({
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el: '#webhook-view',
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var WebhookView = Backbone.View.extend({
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el: "#webhook-view",
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initialize: function (options) {
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const toolId = options.toolId || '';
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const toolVersion = options.toolVersion || '';
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initialize: function(options) {
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var me = this;
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var toolId = options.toolId || "";
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var toolVersion = options.toolVersion || "";
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this.$el.attr('tool_id', toolId);
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this.$el.attr('tool_version', toolVersion);
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this.$el.attr("tool_id", toolId);
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this.$el.attr("tool_version", toolVersion);
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this.model = new WebhookModel();
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this.model.urlRoot = options.urlRoot;
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this.model.fetch({
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success: function() {
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me.render();
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}
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});
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},
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render: function() {
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var webhook = this.model.toJSON();
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this.$el.html(`<div id="${webhook.name}"></div>`);
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if (webhook.styles)
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$("<style/>", { type: "text/css" })
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.text(webhook.styles)
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.appendTo("head");
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if (webhook.script)
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$("<script/>", { type: "text/javascript" })
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.text(webhook.script)
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.appendTo("head");
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return this;
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}
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});
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var add = options => {
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var webhooks = new Webhooks();
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webhooks.url = Galaxy.root + options.url;
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const webhooks = new Webhooks();
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webhooks.fetch({
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async: options.async ? options.async : true,
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success: options.callback
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success: data => {
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data.reset(filterType(data, options.type));
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if (data.length > 0) {
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const index = _.random(0, data.length - 1);
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this.render(data.at(index));
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}
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}
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});
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},
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render: function (model) {
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const webhook = model.toJSON();
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this.$el.html(`<div id="${webhook.id}"></div>`);
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Utils.appendScriptStyle(webhook);
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return this;
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}
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});
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const load = options => {
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const webhooks = new Webhooks();
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webhooks.fetch({
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async: options.async !== undefined ? options.async : true,
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success: data => {
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if (options.type) {
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data.reset(filterType(data, options.type));
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}
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options.callback(data);
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}
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});
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};
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function filterType (data, type) {
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return _.filter(data.models, item => item.get('type').indexOf(type) !== -1);
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}
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export default {
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Webhooks: Webhooks,
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WebhookView: WebhookView,
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add: add
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WebhookView: WebhookView,
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load: load
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};
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@@ -25,6 +25,8 @@ window.make_popup_menus = Popupmenu.make_popup_menus;
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import init_tag_click_function from "ui/autocom_tagging";
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window.init_tag_click_function = init_tag_click_function;
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import Tours from "mvc/tours";
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import Webhooks from "mvc/webhooks";
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import Utils from "utils/utils";
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// console.debug( 'galaxy globals loaded' );
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// ============================================================================
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@@ -176,23 +178,19 @@ $(document).ready(() => {
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Tours.activeGalaxyTourRunner();
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function onloadWebhooks() {
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// Wait until Galaxy.config is loaded.
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if (Galaxy.config) {
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if (Galaxy.config.enable_webhooks) {
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// Load all webhooks with the type 'onload'
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$.getJSON(`${Galaxy.root}api/webhooks/onload/all`, webhooks => {
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_.each(webhooks, webhook => {
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if (Galaxy.root !== undefined) {
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// Load all webhooks with the type 'onload'
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Webhooks.load({
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type: "onload",
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callback: function (webhooks) {
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webhooks.each((model) => {
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var webhook = model.toJSON();
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if (webhook.activate && webhook.script) {
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$("<script/>", { type: "text/javascript" })
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.text(webhook.script)
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.appendTo("head");
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$("<style/>", { type: "text/css" })
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.text(webhook.styles)
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.appendTo("head");
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Utils.appendScriptStyle(webhook);
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}
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});
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});
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}
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}
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});
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} else {
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setTimeout(onloadWebhooks, 100);
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}
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+1
-1
@@ -1,4 +1,4 @@
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name: searchover
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id: searchover
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type:
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- masthead
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activate: true
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+1
-1
@@ -38,7 +38,7 @@ $(document).ready(function() {
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e.stopPropagation();
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if ( $( '.search-screen-overlay' ).is( ':visible' ) ){
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self.removeOverlay();
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}
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}
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else {
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self.clearSearchResults();
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self.showOverlay();
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+2
-2
@@ -1,4 +1,4 @@
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name: tool_list
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id: tool_list
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type:
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- masthead
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activate: true
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@@ -13,7 +13,7 @@ function: >
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'be patient, this might take a moment.');
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}, 1);
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$.getJSON(Galaxy.root + "api/webhooks/tool_list/get_data", function(data) {
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$.getJSON(Galaxy.root + "api/webhooks/tool_list/data", function(data) {
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var popup = window.open('tool_list.html');
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var html = '<!DOCTYPE html><body><h2>' +
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'Create a Docker flavour of this instance:</h2>' +
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+1
-1
@@ -1,4 +1,4 @@
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name: tour_generator
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id: tour_generator
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type:
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- onload
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- tool-menu
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+1
-1
@@ -10,7 +10,7 @@ $(document).ready(function() {
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$('#execute').attr('tour_id', 'execute');
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Toastr.info('Tour generation might take some time.');
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$.getJSON('/api/webhooks/tour_generator/get_data/', {
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$.getJSON('/api/webhooks/tour_generator/data/', {
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tool_id: me.toolId,
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tool_version: me.toolVersion
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}, function(obj) {
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@@ -3,7 +3,6 @@ API Controller providing Galaxy Webhooks
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"""
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import imp
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import logging
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import random
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from galaxy.web import _future_expose_api_anonymous_and_sessionless as \
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expose_api_anonymous_and_sessionless
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@@ -17,7 +16,7 @@ class WebhooksController(BaseAPIController):
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super(WebhooksController, self).__init__(app)
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@expose_api_anonymous_and_sessionless
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def get_all(self, trans, **kwd):
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def all_webhooks(self, trans, **kwd):
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"""
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*GET /api/webhooks/
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Returns all webhooks
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@@ -28,35 +27,9 @@ class WebhooksController(BaseAPIController):
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]
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@expose_api_anonymous_and_sessionless
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def get_random(self, trans, webhook_type, **kwd):
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def webhook_data(self, trans, webhook_id, **kwd):
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"""
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*GET /api/webhooks/{webhook_type}
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Returns a random webhook for a given type
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"""
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webhooks = [
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webhook
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for webhook in self.app.webhooks_registry.webhooks
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if webhook_type in webhook.type and
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webhook.activate is True
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]
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return random.choice(webhooks).to_dict() if webhooks else {}
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@expose_api_anonymous_and_sessionless
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def get_all_by_type(self, trans, webhook_type, **kwd):
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"""
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*GET /api/webhooks/{webhook_type}/all
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Returns all webhooks for a given type
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"""
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return [
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webhook.to_dict()
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for webhook in self.app.webhooks_registry.webhooks
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if webhook_type in webhook.type
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]
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@expose_api_anonymous_and_sessionless
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def get_data(self, trans, webhook_name, **kwd):
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"""
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*GET /api/webhooks/{webhook_name}/get_data/{params}
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*GET /api/webhooks/{webhook_id}/data/{params}
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Returns the result of executing helper function
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"""
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params = {}
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@@ -64,14 +37,12 @@ class WebhooksController(BaseAPIController):
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for key, value in kwd.items():
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params[key] = value
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webhook = [
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webhook = (
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webhook
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for webhook in self.app.webhooks_registry.webhooks
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if webhook.name == webhook_name
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]
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if webhook.id == webhook_id
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).next()
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return imp.load_source('helper', webhook[0].helper).main(
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trans,
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webhook[0],
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params,
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) if webhook and webhook[0].helper != '' else {}
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return imp.load_source(webhook.path, webhook.helper).main(
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trans, webhook, params,
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) if webhook and webhook.helper != '' else {}
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@@ -609,29 +609,17 @@ def populate_api_routes(webapp, app):
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# ===== WEBHOOKS API =====
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# ========================
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webapp.mapper.connect('get_all',
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webapp.mapper.connect('get_all_webhooks',
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'/api/webhooks',
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controller='webhooks',
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action='get_all',
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conditions=dict(method=["GET"]))
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action='all_webhooks',
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conditions=dict(method=['GET']))
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webapp.mapper.connect('get_random',
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'/api/webhooks/{webhook_type}',
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webapp.mapper.connect('get_webhook_data',
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'/api/webhooks/{webhook_id}/data',
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controller='webhooks',
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action='get_random',
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conditions=dict(method=["GET"]))
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webapp.mapper.connect('get_all_by_type',
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'/api/webhooks/{webhook_type}/all',
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controller='webhooks',
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action='get_all_by_type',
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conditions=dict(method=["GET"]))
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webapp.mapper.connect('get_data',
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'/api/webhooks/{webhook_name}/get_data',
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controller='webhooks',
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action='get_data',
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conditions=dict(method=["GET"]))
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action='webhook_data',
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conditions=dict(method=['GET']))
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# =======================
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# ===== LIBRARY API =====
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@@ -1,10 +1,9 @@
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"""
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This module manages loading of Galaxy webhooks.
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"""
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import logging
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import os
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import yaml
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import logging
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from galaxy.util import config_directories_from_setting
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@@ -12,11 +11,12 @@ log = logging.getLogger(__name__)
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class Webhook(object):
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def __init__(self, w_name, w_type, w_activate, w_path):
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self.name = w_name
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self.type = w_type
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self.activate = w_activate
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self.path = w_path
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def __init__(self, id, type, activate, weight, path):
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self.id = id
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self.type = type
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self.activate = activate
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self.weight = weight
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self.path = path
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self.styles = ''
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self.script = ''
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self.helper = ''
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@@ -24,12 +24,12 @@ class Webhook(object):
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def to_dict(self):
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return {
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'name': self.name,
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'id': self.id,
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'type': self.type,
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'activate': self.activate,
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'styles': self.styles,
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'script': self.script,
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'config': self.config
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'config': self.config,
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}
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@@ -48,56 +48,57 @@ class WebhooksRegistry(object):
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def load_webhooks(self):
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for directory in self.webhooks_directories:
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config_dir = os.path.join(directory, 'config')
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config_file_path = None
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for config_file in ['config.yml', 'config.yaml']:
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path = os.path.join(directory, config_file)
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if os.path.isfile(path):
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config_file_path = path
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break
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if not os.path.exists(config_dir):
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log.warning('directory not found: %s', config_dir)
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continue
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if config_file_path:
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try:
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self.load_webhook_from_config(directory, config_file_path)
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except Exception as e:
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log.exception(e)
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config_dir_contents = os.listdir(config_dir)
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# We are assuming that all yml/yaml files in a webhooks'
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# config directory are webhook config files.
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||||
for config_file in config_dir_contents:
|
||||
if config_file.endswith('.yml') or config_file.endswith('.yaml'):
|
||||
self.load_webhook_from_config(config_dir, config_file)
|
||||
def load_webhook_from_config(self, webhook_dir, config_file_path):
|
||||
with open(config_file_path) as file:
|
||||
config = yaml.safe_load(file)
|
||||
|
||||
def load_webhook_from_config(self, config_dir, config_file):
|
||||
weight = config.get('weight', 1)
|
||||
if weight < 1:
|
||||
raise ValueError('Webhook weight must be greater or equal 1.')
|
||||
|
||||
webhook = Webhook(
|
||||
config.get('id'),
|
||||
config.get('type'),
|
||||
config.get('activate', False),
|
||||
weight,
|
||||
webhook_dir,
|
||||
)
|
||||
|
||||
# Read styles into a string, assuming all styles are in a
|
||||
# single file
|
||||
try:
|
||||
with open(os.path.join(config_dir, config_file)) as file:
|
||||
config = yaml.safe_load(file)
|
||||
path = os.path.normpath(os.path.join(config_dir, '..'))
|
||||
webhook = Webhook(
|
||||
config['name'],
|
||||
config['type'],
|
||||
config['activate'],
|
||||
path,
|
||||
)
|
||||
styles_file = os.path.join(webhook_dir, 'styles.css')
|
||||
with open(styles_file, 'r') as file:
|
||||
webhook.styles = file.read().replace('\n', '')
|
||||
except IOError:
|
||||
pass
|
||||
|
||||
# Read styles into a string, assuming all styles are in a
|
||||
# single file
|
||||
try:
|
||||
styles_file = os.path.join(path, 'static/styles.css')
|
||||
with open(styles_file, 'r') as file:
|
||||
webhook.styles = file.read().replace('\n', '')
|
||||
except IOError:
|
||||
pass
|
||||
# Read script into a string, assuming everything is in a
|
||||
# single file
|
||||
try:
|
||||
script_file = os.path.join(webhook_dir, 'script.js')
|
||||
with open(script_file, 'r') as file:
|
||||
webhook.script = file.read()
|
||||
except IOError:
|
||||
pass
|
||||
|
||||
# Read script into a string, assuming everything is in a
|
||||
# single file
|
||||
try:
|
||||
script_file = os.path.join(path, 'static/script.js')
|
||||
with open(script_file, 'r') as file:
|
||||
webhook.script = file.read()
|
||||
except IOError:
|
||||
pass
|
||||
# Save helper function path if it exists
|
||||
helper_path = os.path.join(webhook_dir, '__init__.py')
|
||||
if os.path.isfile(helper_path):
|
||||
webhook.helper = helper_path
|
||||
|
||||
# Save helper function path if it exists
|
||||
helper_path = os.path.join(path, 'helper/__init__.py')
|
||||
if os.path.isfile(helper_path):
|
||||
webhook.helper = helper_path
|
||||
|
||||
webhook.config = config
|
||||
self.webhooks.append(webhook)
|
||||
|
||||
except Exception as e:
|
||||
log.exception(e)
|
||||
webhook.config = config
|
||||
self.webhooks.append(webhook)
|
||||
|
||||
+2
-2
@@ -1,5 +1,5 @@
|
||||
name: history_test1
|
||||
id: history_test1
|
||||
title: History Menu Webhook Item 1
|
||||
type:
|
||||
type:
|
||||
- history-menu
|
||||
activate: true
|
||||
+2
-2
@@ -1,5 +1,5 @@
|
||||
name: history_test2
|
||||
id: history_test2
|
||||
title: History Menu Webhook Item 2
|
||||
type:
|
||||
type:
|
||||
- history-menu
|
||||
activate: true
|
||||
+2
-2
@@ -1,5 +1,5 @@
|
||||
name: masthead_test
|
||||
type:
|
||||
id: masthead_test
|
||||
type:
|
||||
- masthead
|
||||
activate: true
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
name: phdcomics
|
||||
id: phdcomics
|
||||
type:
|
||||
- tool
|
||||
- workflow
|
||||
+1
-1
@@ -32,7 +32,7 @@ $(document).ready(function() {
|
||||
|
||||
getRandomComic: function() {
|
||||
var me = this,
|
||||
url = galaxyRoot + 'api/webhooks/phdcomics/get_data';
|
||||
url = galaxyRoot + 'api/webhooks/phdcomics/data';
|
||||
|
||||
this.$comicImg.html($('<div/>', {
|
||||
id: 'phdcomics-loader'
|
||||
+2
-2
@@ -1,4 +1,4 @@
|
||||
name: trans_object
|
||||
id: trans_object
|
||||
type:
|
||||
- masthead
|
||||
activate: true
|
||||
@@ -7,6 +7,6 @@ icon: fa-user
|
||||
tooltip: Show Username
|
||||
|
||||
function: >
|
||||
$.getJSON(Galaxy.root + "api/webhooks/trans_object/get_data", function(data) {
|
||||
$.getJSON(Galaxy.root + "api/webhooks/trans_object/data", function(data) {
|
||||
alert('Username: ' + data.username);
|
||||
});
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
name: xkcd
|
||||
id: xkcd
|
||||
type:
|
||||
- tool
|
||||
- workflow
|
||||
Reference in New Issue
Block a user