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Commit Graph
145 Commits
Author SHA1 Message Date
Nate Coraor c6b010af34 Add security announcement to v16.01 release notes. 2016-02-24 12:30:56 -05:00
John Chilton f2a27acff8 Drop Python 2.6 with 16.04. 
xref #1596
 2016-02-22 11:40:01 +00:00
Nate Coraor 9c7c75b766 Typo 2016-02-05 09:45:30 -05:00
Nate Coraor 4b24d95f6f Improve documentation about binary-compatibility.cfg. Resolves #1672. 2016-02-04 11:07:31 -05:00
Nate Coraor 33ba1face9 Link from the 16.01 announcement to the Admin wheels documentation, 
document the process of adding new wheels.
 2016-01-28 13:13:09 -05:00
Martin Cech f499ec0cab Merge pull request #1585 from jmchilton/16.01_release_notes 
[16.01] Release notes for 16.01
 2016-01-28 10:30:33 -05:00
Nate Coraor 168f453094 Suggest installing virtualenv from brew 2016-01-26 16:49:39 -05:00
Nate Coraor 9827f32775 conda-requirements.txt renamed to conda-environment.txt 2016-01-26 16:48:38 -05:00
Nate Coraor dc801dc1f6 Add admin documentation for framework dependencies (wheels) for the 
16.01 release.
 2016-01-26 16:17:49 -05:00
Nicola Soranzo 08fbd8923a Merge some entries. Add some missing PRs. 2016-01-26 20:51:43 +00:00
Nicola Soranzo 281a53d975 Small RST fixes. 2016-01-26 20:03:34 +00:00
John Chilton 79dfff4d65 Typo discovered by @nsoranzo 2016-01-26 11:53:03 +00:00
Martin Cech f0b5f7757e add link to Main tour; add sentence to WF nesting 2016-01-26 11:15:36 -05:00
John Chilton 4064bbf94f 16.01 release notes. 2016-01-26 10:22:39 +00:00
John Chilton 528f80e40b Auto-generate 16.01 release notes. 2016-01-26 10:03:08 +00:00
John Chilton 1148081435 Implement a conda dependency resolver. 
Much more information on planemo PR that I used to build a test bed for this:

https://github.com/galaxyproject/planemo/pull/392

Also syncs galaxy with planemo shared library changed.
 2015-12-26 22:46:28 +00:00
John Chilton 6580d51293 Merge pull request #1296 from pvanheus/env-modules-resolve 
Documentation for dependency resolvers
 2015-12-11 15:00:19 -05:00
Peter van Heusden 73b6fb23db * Replaced all references to "version number" with "version string" 2015-12-11 20:53:00 +02:00
Peter van Heusden 035f1b5d66 * Incorporate documentation fixes from nsoranzo 
* Replace {} and .format with %s and % to preserve Python 2.6 compatibility
    * Add a modulepath= paranter to the fake resolver (Bunch object) used to test the modules dependency resolver
 2015-12-11 20:43:03 +02:00
Peter van Heusden 584d886b5e * Mention modulepath attribute in dependency resolver docs 
* Use modulepath in both environment modules resolvers
* Export MODULEPATH in generated shell command
* Add logging for operation of dependency resolvers
 2015-12-11 20:06:13 +02:00
Peter van Heusden e40fbe5374 * Add comment about base_path in sample config 
* Add documentation on dependency resolvers
 2015-12-11 07:31:10 +02:00
Eric Rasche 7cf98d32d8 Align opinions with @jmchilton 2015-12-04 13:36:01 -06:00
Eric Rasche a0c7d87db3 Ease the grunt uglify process 2015-12-04 12:09:40 -06:00
Nicola Soranzo 3524476bc6 Merge branch 'master' into dev 2015-12-01 11:42:16 +00:00
Martin Cech 5bd898118f deprecate TS direct hg api 2015-11-30 14:35:45 -05:00
Nicola Soranzo 4f6aad473d Merge branch 'master' into dev 2015-11-25 16:18:37 +00:00
Dannon Baker a5aeea0685 Slight wording tweak 2015-11-20 11:56:27 -05:00
Martin Cech e9ed5bfa62 clarify the bitbucket support 2015-11-20 11:45:58 -05:00
Martin Cech 76fc6becd6 add text highlights 2015-11-20 10:30:04 -05:00
Martin Cech cf16e2c7d3 add bitbucker deprecation notice 2015-11-20 10:27:59 -05:00
Nate Coraor 72faca1a3a Document GIE proxy config for nginx, mention the Ansible role. 2015-11-18 14:15:40 -05:00
Nicola Soranzo 13eb47e789 Merge pull request #1020 from dannon/issue_procedure 
[PROCEDURES] Issue procedure linkage
 2015-11-16 15:10:24 +00:00
Nicola Soranzo 3c7082c64a Fix doc/source/lib using "sphinx-apidoc -M -f -o doc/source/lib/ lib/" 2015-10-26 19:29:13 +00:00
Dannon Baker 9bbb3b97bd Fix link from org to issues. 2015-10-23 09:28:23 -04:00
Dannon Baker bc217b6a27 Place correctly after the last section. 2015-10-22 15:26:12 -04:00
Dannon Baker daf505eacc Point organization document to issue handling for binding procedure 2015-10-22 15:04:39 -04:00
James Taylor 1c527d3784 Merge pull request #902 from dannon/issue_management 
New policies for bug and issue handling, and roadmap management.
 2015-10-22 14:29:27 -04:00
Dannon Baker 02183910cf Add major/minor 'extra' tags proposed by @jmchilton for release notes management. 2015-10-19 13:20:04 -04:00
Eric Rasche 5dd7370b84 Add a line of documentation about syncing 2015-10-15 16:06:23 -05:00
Martin Cech 4f4526bc30 deprecate old Data Libraries 2015-10-14 18:36:53 -04:00
Eric Rasche 705445a2f2 Correct doc script name 2015-10-14 14:51:21 -05:00
Eric Rasche 1f9be2410b Documented use of library upload tool 2015-10-14 14:48:30 -05:00
Eric Rasche a8b727791f Correct language in galaxy dev doc 2015-10-14 14:17:32 -05:00
Dannon Baker 614ec9de90 Add 'project' documents to the actual documentation tree. 2015-10-14 13:22:11 -04:00
Dannon Baker a4e69f44cd Add reference to organization document regarding 'procedures' tag. 2015-10-14 12:47:28 -04:00
Dannon Baker 05c5ecdd59 Swap from markdown to rst, since it's in docs now. Gross. 2015-10-14 12:36:46 -04:00
Dannon Baker f7a97e35e5 Relocate issues.md to docs 2015-10-14 12:35:48 -04:00
John Chilton b7bf42e1b4 Fill in release notes for 15.10. 2015-10-14 17:05:06 +01:00
Nitesh Turaga 5b93a66fae Added missing lib/main.js 2015-10-07 15:06:21 -04:00
John Chilton c3ef5467c7 Eliminate LWR from Galaxy. 2015-10-06 12:33:36 +01:00