opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-24 16:30:27 +08:00
Code Issues Packages Projects Releases Wiki Activity

Fix doc/source/lib using "sphinx-apidoc -M -f -o doc/source/lib/ lib/"

Browse Source
This commit is contained in:
Nicola Soranzo
2015-10-26 19:29:13 +00:00
parent 9c2a07d424
commit 3c7082c64a
14 changed files with 69 additions and 45 deletions
Download Patch File Download Diff File Expand all files Collapse all files
doc/source/lib/galaxy.auth.providers.rst
+8
View File
@@ -33,4 +33,12 @@ galaxy.auth.providers.localdb module
:undoc-members:
:show-inheritance:
galaxy.auth.providers.pam_auth module
-------------------------------------
.. automodule:: galaxy.auth.providers.pam_auth
:members:
:undoc-members:
:show-inheritance:
doc/source/lib/galaxy.datatypes.rst
+8
View File
@@ -51,6 +51,14 @@ galaxy.datatypes.chrominfo module
:undoc-members:
:show-inheritance:
galaxy.datatypes.constructive_solid_geometry module
---------------------------------------------------
.. automodule:: galaxy.datatypes.constructive_solid_geometry
:members:
:undoc-members:
:show-inheritance:
galaxy.datatypes.coverage module
--------------------------------
doc/source/lib/galaxy.dependencies.rst
+8
View File
@@ -0,0 +1,8 @@
galaxy.dependencies package
===========================
.. automodule:: galaxy.dependencies
:members:
:undoc-members:
:show-inheritance:
doc/source/lib/galaxy.eggs.rst
-20
View File
@@ -6,23 +6,3 @@ galaxy.eggs package
:undoc-members:
:show-inheritance:
Submodules
----------
galaxy.eggs.dist module
-----------------------
.. automodule:: galaxy.eggs.dist
:members:
:undoc-members:
:show-inheritance:
galaxy.eggs.scramble module
---------------------------
.. automodule:: galaxy.eggs.scramble
:members:
:undoc-members:
:show-inheritance:
doc/source/lib/galaxy.jobs.runners.rst
-1
View File
@@ -49,7 +49,6 @@ galaxy.jobs.runners.local module
:undoc-members:
:show-inheritance:
galaxy.jobs.runners.pbs module
------------------------------
doc/source/lib/galaxy.rst
+1
View File
@@ -15,6 +15,7 @@ Subpackages
galaxy.auth
galaxy.dataset_collections
galaxy.datatypes
galaxy.dependencies
galaxy.eggs
galaxy.exceptions
galaxy.external_services
doc/source/lib/galaxy.tools.deps.resolvers.rst
+8
View File
@@ -57,4 +57,12 @@ galaxy.tools.deps.resolvers.tool_shed_packages module
:undoc-members:
:show-inheritance:
galaxy.tools.deps.resolvers.unlinked_tool_shed_packages module
--------------------------------------------------------------
.. automodule:: galaxy.tools.deps.resolvers.unlinked_tool_shed_packages
:members:
:undoc-members:
:show-inheritance:
doc/source/lib/galaxy.web.framework.middleware.rst
+8
View File
@@ -57,6 +57,14 @@ galaxy.web.framework.middleware.static module
:undoc-members:
:show-inheritance:
galaxy.web.framework.middleware.statsd module
---------------------------------------------
.. automodule:: galaxy.web.framework.middleware.statsd
:members:
:undoc-members:
:show-inheritance:
galaxy.web.framework.middleware.translogger module
--------------------------------------------------
doc/source/lib/galaxy.webapps.galaxy.controllers.rst
-16
View File
@@ -41,14 +41,6 @@ galaxy.webapps.galaxy.controllers.biostar module
:undoc-members:
:show-inheritance:
galaxy.webapps.galaxy.controllers.cloudlaunch module
----------------------------------------------------
.. automodule:: galaxy.webapps.galaxy.controllers.cloudlaunch
:members:
:undoc-members:
:show-inheritance:
galaxy.webapps.galaxy.controllers.data_manager module
-----------------------------------------------------
@@ -209,14 +201,6 @@ galaxy.webapps.galaxy.controllers.tool_runner module
:undoc-members:
:show-inheritance:
galaxy.webapps.galaxy.controllers.ucsc_proxy module
---------------------------------------------------
.. automodule:: galaxy.webapps.galaxy.controllers.ucsc_proxy
:members:
:undoc-members:
:show-inheritance:
galaxy.webapps.galaxy.controllers.user module
---------------------------------------------
doc/source/lib/galaxy.webapps.reports.controllers.rst
+8
View File
@@ -9,6 +9,14 @@ galaxy.webapps.reports.controllers package
Submodules
----------
galaxy.webapps.reports.controllers.home module
----------------------------------------------
.. automodule:: galaxy.webapps.reports.controllers.home
:members:
:undoc-members:
:show-inheritance:
galaxy.webapps.reports.controllers.jobs module
----------------------------------------------
doc/source/lib/galaxy.webapps.rst
+12
View File
@@ -15,3 +15,15 @@ Subpackages
galaxy.webapps.reports
galaxy.webapps.tool_shed
Submodules
----------
galaxy.webapps.util module
--------------------------
.. automodule:: galaxy.webapps.util
:members:
:undoc-members:
:show-inheritance:
doc/source/lib/galaxy.webapps.tool_shed.api.rst
+8
View File
@@ -25,6 +25,14 @@ galaxy.webapps.tool_shed.api.categories module
:undoc-members:
:show-inheritance:
galaxy.webapps.tool_shed.api.configuration module
-------------------------------------------------
.. automodule:: galaxy.webapps.tool_shed.api.configuration
:members:
:undoc-members:
:show-inheritance:
galaxy.webapps.tool_shed.api.groups module
------------------------------------------
doc/source/lib/modules.rst
-1
View File
@@ -9,7 +9,6 @@ lib
galaxy_utils
log_tempfile
mimeparse
pkg_resources
psyco_full
pulsar
tool_shed
doc/source/lib/pkg_resources.rst
-7
View File
@@ -1,7 +0,0 @@
pkg_resources module
====================
.. automodule:: pkg_resources
:members:
:undoc-members:
:show-inheritance: