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Documented use of library upload tool

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Eric Rasche
2015-10-14 14:48:30 -05:00
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doc/source/admin/index.rst
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interactive_environments.rst
useful_scripts.rst
doc/source/admin/useful_scripts.rst
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Useful Scripts and Administration Tricks
========================================
This page aims to help ease the burden of administration with some easy to use scripts and documentation on what is available for admins to use.
Uploading a directory into a Data Library
-----------------------------------------
Data libraries can really ease the use of Galaxy for your administrators and end users. They provide a form of shared folders that users can copy datasets from into their history.
This script was developed to be as general as possible, allowing you to pipe the output of a much more complex find command to this script, uploading all of the files into a data library:
.. code-block:: console
$ find /path/to/sequencing-data/ -name '*.fastq' -or -name '*.fa' | python $GALAXY_ROOT/scripts/api/library_upload_files.py
Find has an extremely expressive command line for selecting specific files that are of interest to you. These will then be recursively uploaded into Galaxy, maintaining the folder hierarchy, a useful feature when moving legacy data into Galaxy.