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Author SHA1 Message Date
guerler ccf2e13235 Attempt to combine typing by reusing HistoryDetailed 2024-02-08 15:46:05 -05:00
guerler 7a2eb798a0 Determine qqv mode by availability of search term 2024-02-08 15:46:05 -05:00
guerler 406b697c34 Combine legacy and modern history endpoint pattern 2024-02-08 15:46:05 -05:00
mvdbeek 39bfc6ab78 Merge branch 'release_23.2' into dev 2024-02-08 12:23:28 +01:00
mvdbeek 2d702a7402 Merge branch 'release_23.1' into release_23.2 2024-02-08 12:22:32 +01:00
mvdbeek 0008b4d7cc Merge branch 'release_23.0' into release_23.1 2024-02-08 12:21:53 +01:00
Marius van den Beek 4c1c8e227f Merge pull request #17384 from ahmedhamidawan/fix_genome_build_filter_postgres 
[23.0] Fix History contents `genome_build` filter postgresql bug
 2024-02-08 12:20:32 +01:00
mvdbeek b278d8a2aa Merge branch 'release_23.2' into dev 2024-02-08 11:35:49 +01:00
mvdbeek 327dfa0056 Merge branch 'release_23.1' into release_23.2 2024-02-08 11:08:15 +01:00
Marius van den Beek 62ee88db55 Merge pull request #17433 from davelopez/23.1_fix_bulk_operations_menu 
[23.1] Fix history bulk operations menu conditions
 2024-02-08 11:04:07 +01:00
Marius van den Beek 5f25655096 Merge pull request #17346 from jmchilton/model_store_fixes 
Fix model store exports that include implicit conversions.
 2024-02-08 10:59:36 +01:00
Marius van den Beek 406dda2164 Merge pull request #17419 from martenson/multi-input-sorting 
[23.2] add a test for multi input element when hda and dces are mixed together
 2024-02-08 10:57:00 +01:00
Marius van den Beek cb97ef1029 Merge pull request #17426 from davelopez/23.1_encode_tool_link_consistently 
[23.1] Encode tool link consistently
 2024-02-08 10:55:36 +01:00
Nicola Soranzo 5e14d03779 Merge branch 'release_23.1' into release_23.2 2024-02-07 22:50:08 +00:00
Nicola Soranzo 52933ed5fd Merge branch 'release_23.0' into release_23.1 2024-02-07 22:48:53 +00:00
Martin Cech f5bb8176e7 Merge pull request #17427 from jmchilton/workflow_label_modal_fix 
[23.2] Fix workflow report markdown editor toolbox becoming non-responsive.
 2024-02-07 18:27:49 +01:00
Martin Cech af169f711e Merge pull request #17398 from jmchilton/typed_testing 
Some additional typing for test interactor stuff.
 2024-02-07 18:23:08 +01:00
Marius van den Beek c654c8866b Merge pull request #17429 from nsoranzo/release_23.0_python-multipart_0.0.7 
[23.0] Update python-multipart to 0.0.7
 2024-02-07 15:42:28 +01:00
Marius van den Beek 1e84387dfd Merge pull request #17431 from davelopez/23.2_fix_upload_target_history 
[23.2] Fix target history when uploading files
 2024-02-07 15:42:10 +01:00
Marius van den Beek 47926baac6 Merge pull request #17155 from guerler/grids_tool_versions 
Remove legacy tool versions list from admin panel
 2024-02-07 15:41:17 +01:00
davelopez f60f0ae6e3 Fix new edge case where all items might be already deleted 
This case was previously prevented at the UI level but should be considered here.
 2024-02-07 14:58:52 +01:00
davelopez bc0b3eb98d Fix menu display conditions to adapt to "any" filter 2024-02-07 14:52:53 +01:00
davelopez 5f14cd25a6 Add test coverage for "any" state in menu options 2024-02-07 14:50:28 +01:00
davelopez a42993edc8 Fix target history when uploading files 2024-02-07 12:18:14 +01:00
Nicola Soranzo de8d4562b6 Add missing Werkzeug test requirement 
Used in `test/unit/util/test_get_url.py` since commit
69ebbb761a .

Pin Werkzeug in `lib/galaxy/dependencies/dev-requirements.txt`
to latest version compatible with pytest-httpserver 1.0.6 .

Fix unit test collection error on Python 3.11:
```
  File "/home/runner/work/galaxy/galaxy/galaxy root/.tox/unit-coverage/lib/python3.11/site-packages/pytest_httpserver/httpserver.py", line 26, in <module>
    from werkzeug.http import parse_authorization_header
ImportError: cannot import name 'parse_authorization_header' from 'werkzeug.http' (/home/runner/work/galaxy/galaxy/galaxy root/.tox/unit-coverage/lib/python3.11/site-packages/werkzeug/http.py)
```
 2024-02-07 05:44:42 +00:00
Nicola Soranzo 10ace7bd10 Update python-multipart to 0.0.7 
xref: https://github.com/tiangolo/fastapi/security/advisories/GHSA-qf9m-vfgh-m389
 2024-02-06 17:33:21 +00:00
David López e5dc724b27 Merge pull request #17399 from jmchilton/typescript_markdown_dialog 
Refactor MarkdownDialog.vue to ts+composition.
 2024-02-06 17:52:06 +01:00
John Chilton ee27ccedc8 Fix markdown editor toolbox becoming non-responsive. 2024-02-06 11:40:04 -05:00
John Chilton 741650dd3e Migrate MarkdownDialog API interactions to fetchers. 2024-02-06 11:11:47 -05:00
John Chilton 8761a3c8a8 Reactive history id in MarkdownDialog.vue. 2024-02-06 11:11:47 -05:00
John Chilton 009a17f0fc Refactor MarkdownDialog.vue to ts+composition. 2024-02-06 11:11:47 -05:00
Marius van den Beek 7ff64b7360 Merge pull request #17414 from jdavcs/23.2_packages_build_1 
[23.2] Cleanup versions, formatting in setup.cfg, HISTORY.rst in all packages
 2024-02-06 15:27:57 +01:00
davelopez d787727561 Add test case for tool IDs with + 2024-02-06 14:53:17 +01:00
davelopez 22d507112c Fix tool link encoding 
Makes it easier to share when pasting it in oder contexts outside the web browser.
 2024-02-06 14:30:49 +01:00
davelopez 71237cf5cf Add unit test for Tools copyLink utility 2024-02-06 14:29:37 +01:00
Martin Cech 9c3a02037f Merge pull request #17421 from nuwang/add_link_to_training 
Add signpost to training material
 2024-02-05 22:26:45 +01:00
Nuwan GoonasekeraandHelena b73490c374 Update doc/source/index.rst 
Co-authored-by: Helena <hexylena@galaxians.org>
 2024-02-05 15:12:14 +05:30
nuwang 44d96ea28f Add signpost to training material 2024-02-05 11:18:23 +05:30
Martin Cech c5742fcdbb add a test for multi input element when hda and dces are mixed together 2024-02-02 12:41:06 -08:00
Marius van den Beek bbfc0425c4 Merge pull request #17411 from davelopez/purge_groups_and_roles_from_db 
Purge `groups` and `roles` from DB (for real)
 2024-02-02 16:39:21 +01:00
John Davis 019c49594f Fix formatting around new version in HISTORY.rst 2024-02-02 10:12:34 -05:00
Marius van den Beek beea9fa832 Merge pull request #17390 from davelopez/cancel_deleted_user_jobs 
Cancel all active jobs when the user is deleted
 2024-02-02 11:01:28 +01:00
David López f7e6d16da4 Merge pull request #17388 from davelopez/update_webdav_conf_sample 
[23.1] Set webdav file source to use temp files by default
 2024-02-02 10:26:18 +01:00
John Davis ac15c87379 Update package versions to 23.2.dev0 
Update setup.cfg, HISTORY.rst.
Make all dev package versions consistent.
 2024-02-01 22:50:21 -05:00
John Davis b83073f4d2 Change version for schema and TS packages 
To make them consistent with other package versions:
23.1.0.dev0 >> 23.1.dev0.
The extra "0" was likely added automatically by running the
build_packages.sh script.
 2024-02-01 18:34:11 -05:00
John Davis 121e38d570 Drop empty bullet points from package HISTORY.rst files 2024-02-01 16:44:49 -05:00
John Davis c2c3154b38 Merge pull request #17408 from jdavcs/dev_packagebuild_2 
Enable comments in package dag file
 2024-02-01 13:42:43 -05:00
Nicola Soranzo be090829d4 Merge pull request #17409 from wm75/fix-xsd 
Fix IUC best practices links, mention data_source_async in XSD
 2024-02-01 17:24:22 +00:00
John Davis 2337c9ca83 Partially remove bash-specific syntax 2024-02-01 12:22:21 -05:00
davelopez b9e40f8fa6 Make group update API test rerunnable in same instance 2024-02-01 17:40:45 +01:00