mvdbeek
ca6f2fa68e
Create install database with create_db.sh
2021-03-30 13:44:36 +02:00
Sergey Golitsynskiy
72c3cee00e
Update wording
2021-03-15 12:10:54 -04:00
mvdbeek
6ce5b63275
Add release testing credits to template
2021-03-15 15:22:42 +01:00
mvdbeek
75b641b89c
Tweak release issue template
2021-03-10 18:36:48 +01:00
mvdbeek
09de447b6d
Skip PRs that are already in the release notes
...
When updating the (already edited) release notes during the PR process
it is a major pain which PRs are really new. This makes that much
easier. Just be sure to keep the anchors (`.. bug`, `.. enhancement`) in until we are ready to
publish the release
2021-03-10 16:55:42 +01:00
John Chilton
53e1bc466e
Some more progress on 21.01 release notes.
2021-02-16 16:42:26 -05:00
Nicola Soranzo
e225de9b00
Merge pull request #11103 from jmchilton/more_docs_stuff_3
2021-01-12 17:58:24 +00:00
John Chilton
ee3280ad52
Mark pre-annoucnement page as orphan.
...
I guess I always imagined we would link these but then I was told we shouldn't - so I don't even know why we're generating them to be honest then.
2021-01-12 09:29:55 -05:00
mvdbeek
e93627a435
Lint fixes, prompt for sqlalchemy_schemadisplay install
2021-01-12 08:23:10 -05:00
Dannon Baker
dbc47ac083
Import order fixes for schemadisp script
2021-01-12 06:59:33 -05:00
Dannon Baker
3d4f7b22b3
Galaxy schema rendering script.
...
Uses sqlite_schemadisp to generate images like the one at
https://galaxyproject.org/admin/internals/data-model/
2021-01-12 06:55:14 -05:00
Marius van den Beek
a3e042289f
Merge pull request #11074 from mvdbeek/fastapi_app_tweak
...
Build FastAPI app in a single location
2021-01-07 19:27:31 +01:00
Marius van den Beek
03ba8335eb
Merge pull request #10594 from gmauro/pgcleanup
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pgcleanup can redirect logging to stdout
2021-01-07 19:15:49 +01:00
mvdbeek
b591a811c0
Build FastAPI app in a single location
2021-01-07 16:26:06 +01:00
John Chilton
c599177f5f
mypy typing for galaxy-app
2020-12-30 09:41:34 -05:00
John Chilton
044eb906cf
Lint and spelling fixes.
2020-12-22 11:18:31 +01:00
John Chilton
16951e4176
Add FastAPI roles controller, de-duplicate app initialization for FastAPI.
2020-12-22 11:18:31 +01:00
mvdbeek
e865741092
Adjust galaxy-main script so we can import from it for easy app setup
2020-12-22 11:18:00 +01:00
Gianmauro Cuccuru and Nicola Soranzo
9ebde5f1e9
Update scripts/cleanup_datasets/pgcleanup.py
...
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2020-12-01 15:32:06 +01:00
Gianmauro Cuccuru
7ceeb70f75
Add an option to the pgcleanup script to redirect logging to a different log file
2020-12-01 14:11:32 +01:00
Nicola Soranzo
e40e5aef7e
Upgrade syntax using pyupgrade --py36-plus
2020-11-18 16:16:46 +00:00
Gianmauro Cuccuru
90e228cf91
Add an option to the pgcleanup script to redirect logging to stdout
2020-10-31 05:27:31 +01:00
Sergey Golitsynskiy
31b908226a
Set uwsgi's honor-stdin when in debug mode
2020-10-28 14:08:25 -04:00
Dannon Baker
434d406bde
Cleanout communication server.
...
I don't think anyone's actively using this anymore, and most
communication has moved to (also embeddable) things like Gitter, etc.
2020-10-22 09:58:34 -04:00
mvdbeek
36d6eaa9e8
Lint release_diff script
2020-10-14 10:43:04 +02:00
Dannon
8959aa9213
Merge pull request #10258 from hexylena/release-diff
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Add script to diff two release config files.
2020-10-09 16:39:47 -04:00
Marius van den Beek
65718c9d30
Merge pull request #10350 from ic4f/dev_missing_indexes_script
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Script for finding missing db indexes
2020-10-08 16:24:08 +02:00
Nicola Soranzo
9d74bba7fb
Drop support for retired Python 3.5
...
Upgrade syntax using `pyupgrade --py36-plus` .
Manually drop several `six` imports.
Also:
- Remove broken pr_cache in scripts/bootstrap_history.py
- Fix broken prefix removal in lib/galaxy/tool_util/deps/mulled/mulled_build.py
2020-10-07 11:52:13 +01:00
Sergey Golitsynskiy and Marius van den Beek
574fa4cb1f
Let get_config() handle env override
...
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com >
2020-10-04 23:25:23 -04:00
Sergey Golitsynskiy
f27b4e50f6
Add github workflow; env var to override db uri
2020-10-03 02:26:40 -04:00
Sergey Golitsynskiy
20c7cdb2cb
Rename missing_index > index_tuple
2020-10-03 02:26:40 -04:00
Sergey Golitsynskiy and Nicola Soranzo
b9093e33da
Update scripts/check_model.py
...
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2020-10-03 02:26:40 -04:00
Sergey Golitsynskiy and Nicola Soranzo
7719f53bca
Update scripts/check_model.py
...
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2020-10-03 02:26:40 -04:00
Sergey Golitsynskiy
2dbfdce295
Add script + wrapper
2020-10-03 02:26:40 -04:00
Helena Rasche
483b21d906
remove trailing commas
2020-09-22 12:10:04 +02:00
Helena Rasche
cac94a0f24
output
2020-09-22 12:06:06 +02:00
Helena Rasche
01a2aa4bd9
small bug
2020-09-22 12:01:07 +02:00
Helena Rasche
721ad64a61
improvements
2020-09-22 11:59:36 +02:00
Helena Rasche
64892baf5c
add new files
2020-09-22 11:46:29 +02:00
Helena Rasche
6a1edfdb35
make it loop over yml
2020-09-22 11:39:35 +02:00
Helena Rasche
f7f44371f6
Add script to diff two release config files.
2020-09-22 11:11:30 +02:00
Kaivan Kamali
eb6129a3ac
Another import re-ordering :(
2020-09-11 16:49:24 -04:00
Kaivan Kamali
1894248a5f
Sorted imports
2020-09-11 16:05:55 -04:00
Kaivan Kamali
5b77b57e28
Fixed import orders
2020-09-11 11:44:00 -04:00
Kaivan Kamali
1f12c7e42c
Made some changes based on code review feedback.
2020-09-08 12:17:17 -04:00
Kaivan Kamali
9191f20d42
Fixed an issue in copy folders to irods
2020-09-01 13:16:01 -04:00
Kaivan Kamali
3b342389d8
Removed some prit statements.
2020-09-01 12:32:30 -04:00
Kaivan Kamali
e00e4fd127
Tape resource used based on a cuttoff date
2020-09-01 12:00:56 -04:00
Kaivan Kamali
12f4529f70
irods resource selected based on the last time the dataset was used in a job as input or output. Any dataset used prior to a cuttoff date will be sent to tape resource. Otherewise, the dataset is sent to the regular (non-tape) resource.
2020-08-31 14:17:24 -04:00
Kaivan Kamali
244fc677f4
Initial vesion of SQL statement to get the last usage time of all datasets.
2020-08-28 16:19:30 -04:00
mvdbeek