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galaxy/scripts
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Nicola Soranzo e225de9b00 Merge pull request #11103 from jmchilton/more_docs_stuff_3
2021-01-12 17:58:24 +00:00
..
api
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
auth
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
cleanup_datasets
Update scripts/cleanup_datasets/pgcleanup.py
2020-12-01 15:32:06 +01:00
grt
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
interactivetools
Fix interactivetool python 3 support and tests
2020-01-09 14:40:48 +01:00
loc_files
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
metagenomics
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
microbes
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
objectstore
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
slideshow
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
taxonomy
Tweaks to taxonomy tools
2010-11-15 15:04:59 -05:00
tool_shed
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
tools
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
__init__.py
Adding db_shell.py that can be used to simplify writing command line
2012-03-05 12:11:53 -06:00
apply_tags.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
bootstrap_history.py
Mark pre-annoucnement page as orphan.
2021-01-12 09:29:55 -05:00
build_toolbox.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
check_eggs.py
Add stub fetch_eggs.py/check_eggs.py for people whose build/test/run
2015-11-06 11:06:11 -05:00
check_model.py
Let get_config() handle env override
2020-10-04 23:25:23 -04:00
check_python.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
common_startup_functions.sh
Hide "python: not found" error when Python 2 is not installed
2020-04-27 02:32:06 +01:00
common_startup.sh
Create Python3 virtualenv by default
2020-02-26 10:53:43 +01:00
config_sample_to_kwalify.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
create_db.py
Refactor tool_shed webapp out of Galaxy.
2019-11-11 12:32:19 -05:00
db_shell.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
docker_swarm_manager.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
drmaa_external_killer.py
Fix all E201 and E202 style errors
2017-08-17 11:35:39 +01:00
drmaa_external_runner.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
dump_library_paths.py
Add a script for dumping library file paths for backup
2018-02-01 13:05:16 -05:00
edam_mapping.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
external_chown_script.py
Fix all E201 and E202 style errors
2017-08-17 11:35:39 +01:00
extract_dataset_part.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
extract_toolbox_sections.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
fapi.py
Build FastAPI app in a single location
2021-01-07 16:26:06 +01:00
fetch_eggs.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
functional_tests.py
Decouple API and Selenium tests from galaxy-test-driver (and the whole app!)
2020-07-06 13:57:48 -04:00
galaxy
Make Galaxy installable the Pythonic way via setup.py. Incomplete, but
2016-07-07 13:49:27 -04:00
galaxy_main.py
mypy typing for galaxy-app
2020-12-30 09:41:34 -05:00
galaxy_schemadisp.py
Lint fixes, prompt for sqlalchemy_schemadisplay install
2021-01-12 08:23:10 -05:00
galaxy-main
Adjust galaxy-main script so we can import from it for easy app setup
2020-12-22 11:18:00 +01:00
get_platforms.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
get_uwsgi_args.py
Set uwsgi's honor-stdin when in debug mode
2020-10-28 14:08:25 -04:00
helper.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
maintenance.sh
Fix issues reported by ShellCheck
2019-06-13 12:53:26 +01:00
manage_db.py
Enable on-screen logging for create_db.py and manage_db.py
2019-08-18 11:17:34 +01:00
manage_tool_dependencies.py
Rework config locating logic (it was reading the sample again).
2019-07-08 11:28:31 +02:00
nosetests.py
Fix all E201 and E202 style errors
2017-08-17 11:35:39 +01:00
pages_identifier_conversion.py
clean-fix-page-api - move page revision creation to manager.
2019-05-29 13:43:49 -04:00
paster.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
patch.sh
Add the script I used to create security patches
2016-02-24 16:54:30 -05:00
plugin_staging.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
release-diff.py
Upgrade syntax using pyupgrade --py36-plus
2020-11-18 16:16:46 +00:00
rst2html.py
Fix all E722 errors and ignore E741
2017-10-24 11:29:09 +01:00
runtime_stats.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
secret_decoder_ring.py
Refactor galaxy.web.security into galaxy.security.idencoding.
2019-03-19 14:28:31 -04:00
set_dataset_sizes.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
set_user_disk_usage.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
summarize_timings.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
update_shed_config_path.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
validate_tools.sh
Switch to lxml for xml parsing
2020-05-12 15:00:27 +02:00