Lint and spelling fixes.

This commit is contained in:
John Chilton
2020-12-22 11:18:31 +01:00
committed by mvdbeek
parent 29b11f66c8
commit 044eb906cf
6 changed files with 13 additions and 16 deletions
+1 -1
View File
@@ -34,7 +34,7 @@ class RoleModel(BaseModel):
model_class: str = Field(title="Model class", description="Database model class (Role)")
class RoleDefeinitionModel(BaseModel):
class RoleDefinitionModel(BaseModel):
name: str = RoleNameField
description: str = RoleDescriptionField
user_ids: Optional[List[EncodedDatabaseIdField]] = Field(title="User IDs", default=[])
+8 -7
View File
@@ -19,24 +19,26 @@ from galaxy import web
from galaxy.app import UniverseApplication
from galaxy.managers.base import decode_id
from galaxy.managers.roles import (
RoleDefinitionModel,
RoleManager,
RoleDefeinitionModel,
RoleModel,
)
from galaxy.schema.fields import EncodedDatabaseIdField
from galaxy.webapps.base.controller import BaseAPIController, url_for
from galaxy.work.context import (
SessionRequestContext,
)
from . import (
get_admin_user,
get_app,
get_trans,
)
from galaxy.work.context import (
SessionRequestContext,
)
log = logging.getLogger(__name__)
# Empty paths (e.g. /api/roles) only work if a prefix is defined right here.
# https://github.com/tiangolo/fastapi/pull/415/files
router = APIRouter(tags=["roles"])
@@ -58,7 +60,6 @@ def get_role_manager(app: UniverseApplication = Depends(get_app)) -> RoleManager
return app.role_manager
@cbv(router)
class FastAPIRoles:
role_manager: RoleManager = Depends(get_role_manager)
@@ -75,7 +76,7 @@ class FastAPIRoles:
return role_to_model(trans, role)
@router.post("/api/roles")
def create(self, trans: SessionRequestContext = Depends(get_trans), admin_user=Depends(get_admin_user), role_definition_model: RoleDefeinitionModel = Body(...)) -> RoleModel:
def create(self, trans: SessionRequestContext = Depends(get_trans), admin_user=Depends(get_admin_user), role_definition_model: RoleDefinitionModel = Body(...)) -> RoleModel:
role = self.role_manager.create(trans, role_definition_model)
return role_to_model(trans, role)
@@ -109,7 +110,7 @@ class RoleAPIController(BaseAPIController):
Creates a new role.
"""
expand_json_keys(payload, ["user_ids", "group_ids"])
role_definition_model = RoleDefeinitionModel(**payload)
role_definition_model = RoleDefinitionModel(**payload)
role = self._role_manager.create(trans, role_definition_model)
return role_to_model(trans, role)
+3 -5
View File
@@ -1,9 +1,7 @@
from fastapi import FastAPI, Request
from fastapi.exceptions import RequestValidationError
from fastapi.middleware.wsgi import WSGIMiddleware
from fastapi.responses import JSONResponse
from pydantic.error_wrappers import ValidationError
from fastapi.exceptions import RequestValidationError
from starlette.middleware.base import RequestResponseEndpoint
from starlette.responses import Response
from galaxy.exceptions import MessageException
@@ -15,7 +13,7 @@ def add_exception_handler(
) -> None:
@app.exception_handler(RequestValidationError)
async def exception_middleware(request: Request, exc: MessageException) -> Response:
async def validate_exception_middleware(request: Request, exc: MessageException) -> Response:
exc = validation_error_to_message_exception(exc)
error_dict = api_error_message(None, exception=exc)
return JSONResponse(
@@ -24,7 +22,7 @@ def add_exception_handler(
)
@app.exception_handler(MessageException)
async def exception_middleware(request: Request, exc: MessageException) -> Response:
async def message_exception_middleware(request: Request, exc: MessageException) -> Response:
error_dict = api_error_message(None, exception=exc)
return JSONResponse(
status_code=exc.status_code,
-2
View File
@@ -1,5 +1,3 @@
import json
from galaxy.exceptions import error_codes
from galaxy_test.base.api_asserts import (
assert_error_code_is,
-1
View File
@@ -859,7 +859,6 @@ def launch_uvicorn_multi(kwargs, tempdir, prefix=DEFAULT_CONFIG_PREFIX, config_o
def launch_uvicorn(gx_app, webapp_factory, kwargs, prefix=DEFAULT_CONFIG_PREFIX, config_object=None):
name = prefix.lower()
from fastapi.middleware.wsgi import WSGIMiddleware
host, port = explicitly_configured_host_and_port(prefix, config_object)
gx = webapp_factory(
+1
View File
@@ -1,4 +1,5 @@
import uvicorn
from fastapi import FastAPI
from galaxy_main import (
GalaxyConfigBuilder,
main,