 Alexander Lenail
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0a49f17411
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Modified galaxy.objectstore.rst
Not sure how RST works — would appreciate some guidance here.
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2016-07-19 15:27:01 -04:00 |
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John Chilton
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51f63a7d3e
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Replace embedded Pulsar code with dependency.
Pulsar's setup.py has been parameterized to allow it build a special wheel that doesn't depend on galaxy-lib (https://github.com/galaxyproject/pulsar/commit/ce9d4f9e80936407fe4f793afa6688d75635e827) and instead expects it to come from the environment.
This special dependency has been published to PyPI here (https://pypi.python.org/pypi/pulsar-galaxy-lib) and added to StarForge here (https://github.com/galaxyproject/starforge/pull/79). These are now available on wheels.galaxyproject.org.
In addition to removing the source dirctories - I have removed doc and CI references to these directories.
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2016-03-31 08:17:06 -04:00 |
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Mark Iskander
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825a20ef81
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Modified more names, added bcf_bgzip to datatypes, added converters going both ways
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2015-11-20 13:49:04 -06:00 |
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Mark Iskander
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6cd550e0c7
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Added the bcf_bgzip_to_bcf converter to datatype.converters.rst, renamed files to follow standard naming scheme
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2015-11-20 12:25:00 -06:00 |
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Nicola Soranzo
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3c7082c64a
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Fix doc/source/lib using "sphinx-apidoc -M -f -o doc/source/lib/ lib/"
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2015-10-26 19:29:13 +00:00 |
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John Chilton
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c3ef5467c7
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Eliminate LWR from Galaxy.
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2015-10-06 12:33:36 +01:00 |
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Nicola Soranzo
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ee0ce040ce
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Update to sphinx-apidoc v1.3.1 .
sphinx-apidoc -M -o doc/source/lib/ lib/
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2015-06-29 15:39:12 +01:00 |
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Nicola Soranzo
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f339cc1631
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Fix doc/source/ using sphinx-apidoc v1.1.3 .
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2015-06-29 15:30:49 +01:00 |
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Nicola Soranzo
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025930bfd1
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Move the additional API doc out of autogenerated docs.
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2015-06-29 15:30:26 +01:00 |
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Nicola Soranzo
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416785e16d
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Update rst docs for bab978a4f4 .
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2015-06-24 16:24:25 +01:00 |
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Dannon Baker
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3af3bf5742
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Per IRC discussion, remove demo_sequencer webapp.
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2015-02-21 13:29:58 -05:00 |
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Martin Cech
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5a9259d773
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updated sphinx documentation: added managers; added new API controllers; cleanup
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2014-10-22 17:55:45 -04:00 |
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Nate Coraor
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8fadc6392b
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Rename universe_wsgi.ini -> galaxy.ini everywhere.
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2014-09-15 16:43:51 -04:00 |
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Trevor Wennblom
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195017daf7
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remove misc files that slipped past hgignore
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2014-04-10 22:54:34 -05:00 |
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Nate Coraor
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9c64fc123e
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Remove broken and/or obsolete tools.
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2014-01-27 13:58:31 -05:00 |
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Martin Cech
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87c84e8c5e
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Merged in martenson/galaxy-central-marten (pull request #273)
Initial Data Libraries
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2013-12-19 12:48:22 -05:00 |
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Martin Cech
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3317e25ee1
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refactor + docs
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2013-12-19 12:44:34 -05:00 |
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John Chilton
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1653efcf6e
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RFC: API design guidelines and considerations.
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2013-12-16 15:57:31 -06:00 |
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Dannon Baker
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51b6811867
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Placeholder in api documentation for Return Codes and Format standards.
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2013-12-16 15:17:51 -05:00 |
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Dave Clements
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2935ca8e42
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New RST files describing Sphinx doc for tool shed changes.
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2013-04-01 14:49:17 -07:00 |
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Dannon Baker
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fd5358bb5a
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Sphinx Doc: Remove enable_api step from the api quickstart as it is no longer necessary.
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2013-01-18 10:26:57 -05:00 |
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Dave Clements
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c85177860d
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Update Sphinx RST structural doc to reflect recent code changes.
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2013-01-14 17:01:17 -08:00 |
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Dave Clements
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a3dac95afc
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First iteration of updating Sphinx RST files. These describe classes and modules (and ...) and are used to generate the Sphinx code documentation. However, they are not updated automatically.
Add the patch.py to automate some of the RST update process, but it is still pretty brutal. Look for cleanup in the next few releases.
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2012-12-18 13:27:20 -08:00 |
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Dave Clements
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9ece96cc8f
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All Sphinx related changes:
- Changed from Galaxy Documentation to Galaxy Code Documentation to be clearer
- Dropped galaxy.jobs.rules, as it is now empty.
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2012-11-03 08:51:09 -07:00 |
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Dave Clements
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f39c2cb970
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Bringing Sphinx RST files up to date; changing generated doc so all modules are documented, not just galaxy.*
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2012-10-31 15:41:13 -07:00 |
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Dannon Baker
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1a3a17056e
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Initial commit of Galaxy Documentation.
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2012-06-13 11:31:00 -04:00 |
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