Commit Graph
15356 Commits
Author SHA1 Message Date
guerler 4a77956dc8 Merge branch 'admin_grid_roles' into admin_grid_groups 2017-08-09 12:17:46 -04:00
guerler c57c36b514 Remove over indent 2017-08-09 12:15:09 -04:00
guerler 0f84d8bd91 Add client side form to create new quota 2017-08-09 12:04:44 -04:00
Nicola Soranzo 7ca5cd6585 Fix import order and Python3 compatibility for lib/galaxy/web/base/ 2017-08-09 15:07:34 +01:00
Nicola Soranzo c7d7b6c469 Merge pull request #4395 from jmchilton/parser_to_str_fix
Bugfix: __str__ method on tool parsers would throw an Exception.
2017-08-09 11:20:47 +01:00
Marius van den Beek a001145278 Merge pull request #4383 from jmchilton/split_conda
Bugfix: Ensure task splitting handles before job resolution.
2017-08-09 07:47:22 +02:00
John Chilton 11365e9620 Bugfix: __str__ method on tool parsers would throw an Exception. 2017-08-08 22:53:08 -04:00
John Chilton c03b29f485 Revise comment thanks to note from @mvdbeek. 2017-08-08 22:30:11 -04:00
John Chilton bc23c26cf4 Merge pull request #4391 from mvdbeek/more_version_fixes
Get tools with tool_version in more places
2017-08-08 22:25:44 -04:00
John Chilton e901a0c867 Bugfix for loading subworkflows from workflow descriptions.
Sometimes unrelated workflow steps can be flushed in a half complete state and violate integrity constraints when a subworkflow step causes a flush of during the load of a different step. This fixes that by preloading all subworkflows during workflow import.

This PR doesn't include a test case but one will be included if the CWL branch is merged at a later date (xref https://github.com/common-workflow-language/common-workflow-language/pull/492/commits/cd1dc660259fdff66eb91e85c0ef6c1510468818).
2017-08-08 22:14:57 -04:00
guerler 9f580d0630 Use consistent naming for group and role parameters 2017-08-08 19:32:27 -04:00
guerler 17cd7d16c2 Add manage role support for quotas 2017-08-08 19:28:16 -04:00
guerler bd542000fa Build set default quota forms using client form builder 2017-08-08 16:26:17 -04:00
guerler ae181d776f Provide async support for unsetting default quotas 2017-08-08 16:11:50 -04:00
guerler ad2dc16830 Fix link to edit quota 2017-08-08 15:04:14 -04:00
guerler 643f262ea9 Use client form builder to render edit quota amount form 2017-08-08 15:02:22 -04:00
guerler 9dcc181f72 Fix error message handling for quota operations, set default value for payloads to none 2017-08-08 14:00:48 -04:00
John Chilton ff197fe915 Merge pull request #4386 from mvdbeek/display_minimum_required_galaxy_version
Show minimum required galaxy version in tool shed and galaxy installation process
2017-08-08 13:59:19 -04:00
John Chilton 0da4768c35 Merge pull request #4388 from mvdbeek/iter_headers
Replace list with generator when iterating headers
2017-08-08 13:55:02 -04:00
guerler 83a48f8f33 Build quota renaming form in admin panel using client side form builder 2017-08-08 13:44:58 -04:00
guerler ad60f5a8ea Allow empty params 2017-08-08 13:30:42 -04:00
guerler 0e1b80b28f Add async quota grid operations 2017-08-08 13:27:42 -04:00
Eric Rasche 196a2bbcf5 Merge pull request #3383 from bgruening/extra_user_preferences
Add extension point for user preferences
2017-08-08 18:42:09 +02:00
mvdbeek 43702ccacd Process the first line when setting metdata for mother.otu files 2017-08-08 17:53:24 +02:00
mvdbeek e6c238e234 Move iter_headers into try clause (thx @nsoranzo) 2017-08-08 17:35:04 +02:00
mvdbeek a060690c3a Get tools with tool_version in more places 2017-08-08 17:25:20 +02:00
guerler cdfaebdaa4 Switch quotas grid to dict format 2017-08-08 11:19:16 -04:00
guerler 381bf173d0 Remove message from tool versions 2017-08-08 11:09:49 -04:00
guerler 613f4fb1ce Use dict format for admin tool versions grid 2017-08-08 11:08:43 -04:00
Nicola Soranzo 4a35bd3532 Merge pull request #4390 from jmchilton/toollist
Fix get_tool returning list when it shouldn't.
2017-08-08 15:40:33 +01:00
guerler c827bb0a86 Move unused mako templates to toolshed, adjust paths 2017-08-08 09:59:17 -04:00
guerler 5605f390fe Build manage users and roles for groups with client form builder 2017-08-08 09:56:54 -04:00
guerler e805db6896 Use client to build create groups form 2017-08-08 09:41:24 -04:00
guerler 1795247bd8 Remove new line 2017-08-08 09:25:51 -04:00
guerler 1e83a48c46 Remove exposure of user related operations 2017-08-08 09:18:10 -04:00
guerler 3840c6d617 Fix purge handler for groups 2017-08-08 09:13:30 -04:00
guerler 037b7fa757 Remove exposure of async operation handlers, align naming 2017-08-08 09:11:37 -04:00
mvdbeek fe2d607675 Replace list with generator when iterating headers
This should be more memory-friendly. @blankenberg suggested doing this
in #4319.
2017-08-08 15:10:39 +02:00
guerler 96557cd136 Add async support for purging groups 2017-08-08 09:07:58 -04:00
guerler afdfbf69ff Add async support for undeleting groups 2017-08-08 09:04:34 -04:00
guerler b2d54b377c Add async support for group deleting 2017-08-08 09:01:23 -04:00
guerler 7a58fd113d Remove self directed operation 2017-08-08 08:55:43 -04:00
guerler 1bf2d1782f Use client side formbuilder for rename group form 2017-08-08 08:54:29 -04:00
guerler 097cae6795 Merge branch 'admin_grid_roles' into admin_grid_groups 2017-08-08 08:43:20 -04:00
guerler a7c6c69cbf Fix lint 2017-08-08 08:42:46 -04:00
guerler c72aca4797 Revise admin groups endpoint 2017-08-08 08:41:38 -04:00
John Chilton bf68966acc Fix get_tool returning list when it shouldn't. 2017-08-08 08:36:46 -04:00
guerler 71db6b461d Fix lint
Fix
2017-08-08 08:36:33 -04:00
John Chilton e811221042 Improve cohesion of interaction between ToolOutputCollectionStructure and ToolOutputCollection.
Shield more of ToolOutputCollectionStructure internals from ToolOutputCollection.
2017-08-08 08:32:26 -04:00
John Chilton ecad3996f1 Refactor ToolOutputCollectionStructure to allow it be more easily consumed.
Make complex arguments optional.
2017-08-08 08:32:25 -04:00