Get tools with tool_version in more places

lib/galaxy/managers/workflows.py

@@ -373,7 +373,7 @@ class WorkflowContentsManager(UsesAnnotations):
             step_model = None
             if step.type == 'tool':
                 incoming = {}
-                tool = trans.app.toolbox.get_tool( step.tool_id )
+                tool = trans.app.toolbox.get_tool( step.tool_id, tool_version=step.tool_version )
                 params_to_incoming( incoming, tool.inputs, step.state.inputs, trans.app )
                 step_model = tool.to_json( trans, incoming, workflow_building_mode=workflow_building_modes.USE_HISTORY )
                 step_model[ 'post_job_actions' ] = [{

lib/galaxy/web/base/controller.py

@@ -892,7 +892,7 @@ class UsesVisualizationMixin( UsesLibraryMixinItems ):
         if not job:
             return None
 
-        tool = trans.app.toolbox.get_tool( job.tool_id )
+        tool = trans.app.toolbox.get_tool( job.tool_id, tool_version=job.tool_version )
         if not tool:
             return None
 

lib/galaxy/workflow/extract.py

@@ -305,7 +305,7 @@ class WorkflowSummary( object ):
 
 
 def step_inputs( trans, job ):
-    tool = trans.app.toolbox.get_tool( job.tool_id )
+    tool = trans.app.toolbox.get_tool( job.tool_id, tool_version=job.tool_version )
     param_values = job.get_param_values( trans.app, ignore_errors=True )  # If a tool was updated and e.g. had a text value changed to an integer, we don't want a traceback here
     associations = __cleanup_param_values( tool.inputs, param_values )
     tool_inputs = tool.params_to_strings( param_values, trans.app )

lib/tool_shed/util/workflow_util.py

@@ -49,7 +49,7 @@ class RepoToolModule( ToolModule ):
                     break
         else:
             # We're in Galaxy.
-            self.tool = trans.app.toolbox.get_tool( self.tool_id )
+            self.tool = trans.app.toolbox.get_tool( self.tool_id, tool_version=self.tool_version )
             if self.tool is None:
                 self.errors = 'unavailable'
         self.post_job_actions = {}